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The map label for this gene is yifB [C]

Identifier: 38234091

GI number: 38234091

Start: 1536037

End: 1537587

Strand: Reverse

Name: yifB [C]

Synonym: DIP1512

Alternate gene names: 38234091

Gene position: 1537587-1536037 (Counterclockwise)

Preceding gene: 38234092

Following gene: 38234090

Centisome position: 61.78

GC content: 51.0

Gene sequence:

>1551_bases
ATGGGGCTTGCTAAAACTCGATCAGCGGCAATCTCGGGGGTCACAGGCGTTATCGTCGACGTTGAAGCCAATATCGGAGC
TGGTTTACCCGGCACCTATATCGTGGGACTTGCCGACGCTGCGGTTGCAGAAGCACGTCAACGGATTAAAACTGCTGTGA
ATAACTCAGAGCTACCGTGGCCGAAAACCAAAGTAATAGTCAACCTTTCCCCAGCGTCGTTGCGAAAAAATGGGGCGCAA
TTCGACCTCGGAATATGCATGGCCATCATGGCTGCCTCTGGGATGCATAACCCCGATTGCCGCGATATCGAAAACACTTT
GTTTTTAGGAGAAATCGGCCTAGACGGTGCGATTAAACCGATATCTGGATTAGTTCCAGCATTGTTGGCTGCACGGGGCG
CGGAAATAAGAAATGTGGTCATTCCGTGGGGAAACGCTGCCGAAGCTATGGCGGTAATCGATGATTCCGCAATGAATGTT
CTTGTCGCACGCTCGATTAGCGAGGCAACCGAATGGCTCAAGGGTAAAGATGACTTGATCGCTGCTCATGACGTCATACT
TGATGAGCATGCGACGAAAAAGCAGCCGCACAAAGTGGGCGATATGCAAGATGTTGTGGGACAAAGTGATGCAAAGAAAG
CAGCAGAAATCGCAGTTGCTGGTGGCCACAACATTGTCATGATTGGCCCACCAGGTTCCGGAAAATCCATGATTGCTCAA
CGCATGGCTGGCCTTCTACCTGCTCTCACGCATACAGAAATGATAGAAGCGACAGCGATCCACTCGGTCATGGGACAAGC
CTTCAACGGGCCCATGACGCACCCACCGTTTGTAGCGCCGCATCATTCCATTACTAAAGCCGCGTTATTGGGCGGAGGAT
CCGGAAACCTACAACCCGGAGCTGCCAGCCTGGCACATACTGGTGTTTTGTTTCTTGACGAAGTAAGCGAGATACCAGCA
AATATTCTTGATTGCTTACGAATGCCATTGGAATGCGGCGAAATTAAACTCATGCGGCATCGTCGCGAAGTCACCTTTCC
TGCACGTTTTCAACTAGTTATGGCAACAAACCCGTGTCGCTGTGCGGCAGAGCTACCTTCAGAGTGCCGATGTAGCGCAA
CTACACGAGCACGGTATTTGAGTAATATTTCGGGGCCACTGCGCGATCGACTTGACATTTTTGTACGTACACATGCTCAA
GGTGCCGTGATCTCAGATGCAAACCAAGAGTCCAGTAAATCGATTGCAGAGCGAGTTCAAAGTGCTCGTGAGCGTAGTGA
ACATCGTTGGCGCACTGCGGGCTTTACTGTAACAACCAATGCAGCGATGGATCCGTACCATCTTCGGCGGCATTTCCCCG
CAGATGAGGCATCGATGGCACTTCTTAGCTCCTATCTTGGCGACGGTGAATTGAGCCAACGCGGAGTTGACCGCGCACTG
AAAGTTGCATGGACATTGTGTGATTTGGAAGGAAAAACACGTCCTGACTTAGGCCACACAGCGTATGCACTTGAGCTACG
CGATGATTGTATTAGGGAGAATGCCGCATGA

Upstream 100 bases:

>100_bases
CTTCAAGGGAAACCATTCGCAGATATCCGTTTCGACGTCGTTGCCGTTCACGTCGATGAATATGGTGAGCTAGATATGAC
GCGTTACCAAGGGGTGGAAC

Downstream 100 bases:

>100_bases
GCAGGTTAGAAGCTTGGGCATATTTGTCTCGAGTTTTTGAAGGACCTAGCAGATCACTCCAGAAACTTTTAGAGACAGAA
TCTGATGTAGAAAAAATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MGLAKTRSAAISGVTGVIVDVEANIGAGLPGTYIVGLADAAVAEARQRIKTAVNNSELPWPKTKVIVNLSPASLRKNGAQ
FDLGICMAIMAASGMHNPDCRDIENTLFLGEIGLDGAIKPISGLVPALLAARGAEIRNVVIPWGNAAEAMAVIDDSAMNV
LVARSISEATEWLKGKDDLIAAHDVILDEHATKKQPHKVGDMQDVVGQSDAKKAAEIAVAGGHNIVMIGPPGSGKSMIAQ
RMAGLLPALTHTEMIEATAIHSVMGQAFNGPMTHPPFVAPHHSITKAALLGGGSGNLQPGAASLAHTGVLFLDEVSEIPA
NILDCLRMPLECGEIKLMRHRREVTFPARFQLVMATNPCRCAAELPSECRCSATTRARYLSNISGPLRDRLDIFVRTHAQ
GAVISDANQESSKSIAERVQSARERSEHRWRTAGFTVTTNAAMDPYHLRRHFPADEASMALLSSYLGDGELSQRGVDRAL
KVAWTLCDLEGKTRPDLGHTAYALELRDDCIRENAA

Sequences:

>Translated_516_residues
MGLAKTRSAAISGVTGVIVDVEANIGAGLPGTYIVGLADAAVAEARQRIKTAVNNSELPWPKTKVIVNLSPASLRKNGAQ
FDLGICMAIMAASGMHNPDCRDIENTLFLGEIGLDGAIKPISGLVPALLAARGAEIRNVVIPWGNAAEAMAVIDDSAMNV
LVARSISEATEWLKGKDDLIAAHDVILDEHATKKQPHKVGDMQDVVGQSDAKKAAEIAVAGGHNIVMIGPPGSGKSMIAQ
RMAGLLPALTHTEMIEATAIHSVMGQAFNGPMTHPPFVAPHHSITKAALLGGGSGNLQPGAASLAHTGVLFLDEVSEIPA
NILDCLRMPLECGEIKLMRHRREVTFPARFQLVMATNPCRCAAELPSECRCSATTRARYLSNISGPLRDRLDIFVRTHAQ
GAVISDANQESSKSIAERVQSARERSEHRWRTAGFTVTTNAAMDPYHLRRHFPADEASMALLSSYLGDGELSQRGVDRAL
KVAWTLCDLEGKTRPDLGHTAYALELRDDCIRENAA
>Mature_515_residues
GLAKTRSAAISGVTGVIVDVEANIGAGLPGTYIVGLADAAVAEARQRIKTAVNNSELPWPKTKVIVNLSPASLRKNGAQF
DLGICMAIMAASGMHNPDCRDIENTLFLGEIGLDGAIKPISGLVPALLAARGAEIRNVVIPWGNAAEAMAVIDDSAMNVL
VARSISEATEWLKGKDDLIAAHDVILDEHATKKQPHKVGDMQDVVGQSDAKKAAEIAVAGGHNIVMIGPPGSGKSMIAQR
MAGLLPALTHTEMIEATAIHSVMGQAFNGPMTHPPFVAPHHSITKAALLGGGSGNLQPGAASLAHTGVLFLDEVSEIPAN
ILDCLRMPLECGEIKLMRHRREVTFPARFQLVMATNPCRCAAELPSECRCSATTRARYLSNISGPLRDRLDIFVRTHAQG
AVISDANQESSKSIAERVQSARERSEHRWRTAGFTVTTNAAMDPYHLRRHFPADEASMALLSSYLGDGELSQRGVDRALK
VAWTLCDLEGKTRPDLGHTAYALELRDDCIRENAA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=494, Percent_Identity=35.2226720647773, Blast_Score=268, Evalue=7e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 55017; Mature: 54886

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLAKTRSAAISGVTGVIVDVEANIGAGLPGTYIVGLADAAVAEARQRIKTAVNNSELPW
CCCCCCHHHHHCCCEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC
PKTKVIVNLSPASLRKNGAQFDLGICMAIMAASGMHNPDCRDIENTLFLGEIGLDGAIKP
CCEEEEEEECHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCH
ISGLVPALLAARGAEIRNVVIPWGNAAEAMAVIDDSAMNVLVARSISEATEWLKGKDDLI
HHHHHHHHHHHCCCCCCEEEECCCCCHHHHEEECHHHHHHHHHHHHHHHHHHHCCCCCEE
AAHDVILDEHATKKQPHKVGDMQDVVGQSDAKKAAEIAVAGGHNIVMIGPPGSGKSMIAQ
EHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHEEEEECCCEEEEECCCCCCHHHHHH
RMAGLLPALTHTEMIEATAIHSVMGQAFNGPMTHPPFVAPHHSITKAALLGGGSGNLQPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCC
AASLAHTGVLFLDEVSEIPANILDCLRMPLECGEIKLMRHRREVTFPARFQLVMATNPCR
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCH
CAAELPSECRCSATTRARYLSNISGPLRDRLDIFVRTHAQGAVISDANQESSKSIAERVQ
HHHCCCHHHCCCHHHHHHHHHHCCCHHHHHHHEEEEECCCCCEEECCCCHHHHHHHHHHH
SARERSEHRWRTAGFTVTTNAAMDPYHLRRHFPADEASMALLSSYLGDGELSQRGVDRAL
HHHHHHHHCEECCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
KVAWTLCDLEGKTRPDLGHTAYALELRDDCIRENAA
HHHHHEECCCCCCCCCCCCCEEEEEHHHHHHHCCCC
>Mature Secondary Structure 
GLAKTRSAAISGVTGVIVDVEANIGAGLPGTYIVGLADAAVAEARQRIKTAVNNSELPW
CCCCCHHHHHCCCEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC
PKTKVIVNLSPASLRKNGAQFDLGICMAIMAASGMHNPDCRDIENTLFLGEIGLDGAIKP
CCEEEEEEECHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCH
ISGLVPALLAARGAEIRNVVIPWGNAAEAMAVIDDSAMNVLVARSISEATEWLKGKDDLI
HHHHHHHHHHHCCCCCCEEEECCCCCHHHHEEECHHHHHHHHHHHHHHHHHHHCCCCCEE
AAHDVILDEHATKKQPHKVGDMQDVVGQSDAKKAAEIAVAGGHNIVMIGPPGSGKSMIAQ
EHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHEEEEECCCEEEEECCCCCCHHHHHH
RMAGLLPALTHTEMIEATAIHSVMGQAFNGPMTHPPFVAPHHSITKAALLGGGSGNLQPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCC
AASLAHTGVLFLDEVSEIPANILDCLRMPLECGEIKLMRHRREVTFPARFQLVMATNPCR
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCH
CAAELPSECRCSATTRARYLSNISGPLRDRLDIFVRTHAQGAVISDANQESSKSIAERVQ
HHHCCCHHHCCCHHHHHHHHHHCCCHHHHHHHEEEEECCCCCEEECCCCHHHHHHHHHHH
SARERSEHRWRTAGFTVTTNAAMDPYHLRRHFPADEASMALLSSYLGDGELSQRGVDRAL
HHHHHHHHCEECCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
KVAWTLCDLEGKTRPDLGHTAYALELRDDCIRENAA
HHHHHEECCCCCCCCCCCCCEEEEEHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]