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The map label for this gene is rpoZ

Identifier: 38233913

GI number: 38233913

Start: 1340329

End: 1340607

Strand: Reverse

Name: rpoZ

Synonym: DIP1327

Alternate gene names: 38233913

Gene position: 1340607-1340329 (Counterclockwise)

Preceding gene: 38233914

Following gene: 38233912

Centisome position: 53.87

GC content: 50.18

Gene sequence:

>279_bases
GTGAGCAACGTGGCAGAGAACAATGACGGTGTATATGATGCACCAACCGGTATTACCGCCCCACCGATCGACGAGCTGCT
GAAGCATGTTTCTTCGAAGTATGCTTTGGTGATTTTTGCTGCAAAGCGTGCCCGTCAGATCAATAGCTACTACCAGCAGG
CAGACGAAGGCGTATTTGAATTCGTTGGCCCATTGGTAACTCCTGAGGCTCAGGAAAAGCCGCTTTCAATCGCTATGCGC
GAGATTGAAGCTGGTTTGTTGGACCACGAAGAAGGCTAA

Upstream 100 bases:

>100_bases
AAGGAAATCCTTGTCGGCCGTCGTTAAAGCTAGCGCCTGCTACATTTTTGTGTAGCTGTTGAATCCGAGAACTATCAAGC
TGTGAAGAAGAGGTGCCTCC

Downstream 100 bases:

>100_bases
GGTCTTCGCGGCTTAGACGGACCATAGTTGAAGCAACCCCCTTTGCACTGTGTTTTAAACAGCAAAGGGGGTTCGTTTTA
CTCCAAAATAAGTGAGATTT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MSNVAENNDGVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPEAQEKPLSIAMR
EIEAGLLDHEEG

Sequences:

>Translated_92_residues
MSNVAENNDGVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPEAQEKPLSIAMR
EIEAGLLDHEEG
>Mature_91_residues
SNVAENNDGVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPEAQEKPLSIAMRE
IEAGLLDHEEG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CORDI (P60333)

Other databases:

- EMBL:   BX248357
- RefSeq:   NP_939680.1
- GeneID:   2649881
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1327
- NMPDR:   fig|257309.1.peg.1271
- HOGENOM:   HBG742204
- OMA:   VIFAAKR
- ProtClustDB:   PRK00392
- BioCyc:   CDIP257309:DIP1327-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10076; Mature: 9945

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVAENNDGVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFE
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
FVGPLVTPEAQEKPLSIAMREIEAGLLDHEEG
HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNVAENNDGVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFE
CCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
FVGPLVTPEAQEKPLSIAMREIEAGLLDHEEG
HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910