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The map label for this gene is 15897940

Identifier: 15897940

GI number: 15897940

Start: 930672

End: 931112

Strand: Reverse

Name: 15897940

Synonym: SSO1073

Alternate gene names: NA

Gene position: 931112-930672 (Counterclockwise)

Preceding gene: 15897944

Following gene: 15897939

Centisome position: 31.12

GC content: 36.96

Gene sequence:

>441_bases
ATGGGAATTATTAGAAAAAGAAAAGTAATACTTTACGCTAGAGTATCATCAAACACACAAAAAGACGATCTAGTAAACCA
AGTTAAGTACCTAGAGGAACAGGTCAAGGAGTACGACCAAGTAATCACTGACATAGGTTCCAAGTTAAACATGAAGAGAA
AGGGGTTCTTGAAGTTGTTGAGAATGATATTAAATAACGAAGTATCACGCGTAGTTGTTGCTTACCCAGACAAACTTGTT
AGATTCGGCTTCGAAATCCTAGAGGAGACTTATAAAGCACATGGCTGTGAAATAGTAGTAATAAACCAAGAGGACAAGAC
ACCAGAAGAATTGGTTGAAGACTTAGTCTCAACACTAGTCTCATTCAGTGGGAAACTGTATGGTATGAGGAGTCATAAAT
ACGAAAAGGTGAAGAAATGTGCTGAAGAACTTAAGAATTAG

Upstream 100 bases:

>100_bases
CTATGCAACACTTAGAGAATACGTTAAGAAAGGATACATAAAACCAGTTATACTACAGAGCGGAAAACAAAGATTCAGAG
AAGAAGACATAGAGAGGCTA

Downstream 100 bases:

>100_bases
AAAATTTGAACCGGAAGAGGAATACGTGCACTTCACGTACTCTATCAAGAATAGTGAGAGGGAGAAGAGCAAAGAGTTAA
TTAAAGAATACAGAACACTA

Product: transposon ISC1778 Orf1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MGIIRKRKVILYARVSSNTQKDDLVNQVKYLEEQVKEYDQVITDIGSKLNMKRKGFLKLLRMILNNEVSRVVVAYPDKLV
RFGFEILEETYKAHGCEIVVINQEDKTPEELVEDLVSTLVSFSGKLYGMRSHKYEKVKKCAEELKN

Sequences:

>Translated_146_residues
MGIIRKRKVILYARVSSNTQKDDLVNQVKYLEEQVKEYDQVITDIGSKLNMKRKGFLKLLRMILNNEVSRVVVAYPDKLV
RFGFEILEETYKAHGCEIVVINQEDKTPEELVEDLVSTLVSFSGKLYGMRSHKYEKVKKCAEELKN
>Mature_145_residues
GIIRKRKVILYARVSSNTQKDDLVNQVKYLEEQVKEYDQVITDIGSKLNMKRKGFLKLLRMILNNEVSRVVVAYPDKLVR
FGFEILEETYKAHGCEIVVINQEDKTPEELVEDLVSTLVSFSGKLYGMRSHKYEKVKKCAEELKN

Specific function: Unknown

COG id: COG2452

COG function: function code L; Predicted site-specific integrase-resolvase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR006119
- InterPro:   IPR010093 [H]

Pfam domain/function: PF00376 MerR; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 16974; Mature: 16843

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIIRKRKVILYARVSSNTQKDDLVNQVKYLEEQVKEYDQVITDIGSKLNMKRKGFLKLL
CCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RMILNNEVSRVVVAYPDKLVRFGFEILEETYKAHGCEIVVINQEDKTPEELVEDLVSTLV
HHHHCCHHHEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
SFSGKLYGMRSHKYEKVKKCAEELKN
HHCCHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GIIRKRKVILYARVSSNTQKDDLVNQVKYLEEQVKEYDQVITDIGSKLNMKRKGFLKLL
CCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RMILNNEVSRVVVAYPDKLVRFGFEILEETYKAHGCEIVVINQEDKTPEELVEDLVSTLV
HHHHCCHHHEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
SFSGKLYGMRSHKYEKVKKCAEELKN
HHCCHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]