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The map label for this gene is ydcM [C]

Identifier: 15897939

GI number: 15897939

Start: 929426

End: 930694

Strand: Reverse

Name: ydcM [C]

Synonym: SSO1072

Alternate gene names: 15897939

Gene position: 930694-929426 (Counterclockwise)

Preceding gene: 15897940

Following gene: 15897938

Centisome position: 31.1

GC content: 43.89

Gene sequence:

>1269_bases
GTGCTGAAGAACTTAAGAATTAGAAAATTTGAACCGGAAGAGGAATACGTGCACTTCACGTACTCTATCAAGAATAGTGA
GAGGGAGAAGAGCAAAGAGTTAATTAAAGAATACAGAACACTACTACAGAAAGCAATTGACTACCTGTGGAATTTAACGA
AAATACAAGTAAGAAAAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAAGGAAGTGTACAAACCACTTAGGGAA
GAGTTGGAGAAGATCAACCACCTCGCGTCACACTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTG
GAGGAAAAGGGCCATAAAGGGGAGAGCTTCGATTGAAAAACCAAGGGTGAAGAAGGCTTACGTTAGGATAAAGACGACTC
TGAGGAAGGTTGTGGGGGAAAGCGTTAGAATAACTGTAAGACCTCACGAGTACATCACCTTCCCGTGGAGTAAGTCATGG
TTCTCAAGAAGGGTTAGGGAGTTGGAACTTGGCGAACCTATAATTAAGGAGGAGAAAGTGTATTTGCCATTTCGTTACAA
GTTACCGTGGGTAACACCAGTGAACTTTCTAGCTATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAAT
TCGTTACAATCTCTCTGAAGCAGTTGTACTCCCTTAAGTACTCTATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCA
TCAAAGCACACGAAGAGGGGGAGAGAGTTGTTAAGGAAGTATTCGCATAGGGAGAGGAATCGCGTTCTGGACTTCGTTCA
CAAGTTTGTAAACACTTTGTTGGACTTGTACCCCATGACGTTTTTCGCTGTGGAAAAGCTTAACAAAGAGAGTATGTTTA
AGGATGCTAATGGCTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGAGGAGTATACATAGAGTGTTGAAGTACAAGGCT
CCGCTTTACGGTTCTTTCGTTAAGGAAGTGAACCCACACCTCACCTCGAGGTCTTGCCCCAGATGTGGGTTTGTATCCCG
AAAGGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTCAAGTTGGATAGGCAACTGAACGCGTCACTGAATATTTATC
TCAAGATGTGCGGTTTTCCTCACATCCGTGAAATAGCGCGGGTGTGGGTTGGGGTTATCCCGCTAATGGGGCGGAGAGGG
ATGAACGTCCGCGACTTCGGTGAAGCCCAAGGGCTGAGGGTTGATATTAAATATCATGAAATCCTATGA

Upstream 100 bases:

>100_bases
ACACCAGAAGAATTGGTTGAAGACTTAGTCTCAACACTAGTCTCATTCAGTGGGAAACTGTATGGTATGAGGAGTCATAA
ATACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCTATTGTGATCTTGATCCAGTTGTTAAGTCTAGCAGTAAGAGTGTTGTTTCAAGGGGTATTTCTAGGAG
ATGCTGTTTTGAGGAGGGCT

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNVRDFGEAQGLRVDIKYHEIL

Sequences:

>Translated_422_residues
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNVRDFGEAQGLRVDIKYHEIL
>Mature_422_residues
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRG
MNVRDFGEAQGLRVDIKYHEIL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50155; Mature: 50155

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIKEEKV
CHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHH
SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRGMNVRDFGEAQGLRVDIKYHE
HHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC
IL
CC
>Mature Secondary Structure
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGNYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIKEEKV
CHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHH
SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIREIARVWVGVIPLMGRRGMNVRDFGEAQGLRVDIKYHE
HHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC
IL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]