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The map label for this gene is clpQ

Identifier: 15926836

GI number: 15926836

Start: 1242040

End: 1242585

Strand: Direct

Name: clpQ

Synonym: SA1096

Alternate gene names: 15926836

Gene position: 1242040-1242585 (Clockwise)

Preceding gene: 15926835

Following gene: 15926837

Centisome position: 44.13

GC content: 39.38

Gene sequence:

>546_bases
ATGAGTAATACAACATTACATGCAACAACAATTTATGCTGTAAGACATAATGGGAAAGCAGCTATGGCTGGAGATGGACA
AGTAACGCTTGGTCAACAAGTCATCATGAAACAAACGGCAAGAAAAGTGCGACGTTTATATGAAGGTAAAGTGTTAGCTG
GTTTCGCAGGTAGTGTAGCAGATGCGTTTACGTTATTTGAAAAATTTGAAACAAAATTACAACAGTTTAGTGGTAACTTA
GAAAGAGCTGCTGTTGAATTGGCACAAGAATGGCGAGGCGATAAACAATTACGTCAATTAGAAGCTATGCTAATTGTAAT
GGATAAAGATGCTATTTTAGTTGTCAGTGGAACTGGCGAAGTTATTGCCCCAGATGATGACCTTATCGCTATTGGATCAG
GGGGCAACTACGCATTAAGCGCAGGACGTGCATTGAAACGCCATGCATCGCATTTGTCTGCTGAAGAAATGGCATATGAG
AGCTTGAAAGTAGCGGCTGATATTTGTGTCTTTACCAACGATAATATTGTTGTTGAAACACTATAA

Upstream 100 bases:

>100_bases
TTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGAAAAGTGTATCTAAATGCACATCCTCGA
GCGAAAAAGGAGAATGAAAC

Downstream 100 bases:

>100_bases
TAATCAGAGCACGATAAATAATTACGACCAATTAATTTTAGTTAAAAGACGGAGGAATGAAATTAATGGATACAGCTGGA
ATAAGATTAACTCCAAAAGA

Product: ATP-dependent protease peptidase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVADAFTLFEKFETKLQQFSGNL
ERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGEVIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYE
SLKVAADICVFTNDNIVVETL

Sequences:

>Translated_181_residues
MSNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVADAFTLFEKFETKLQQFSGNL
ERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGEVIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYE
SLKVAADICVFTNDNIVVETL
>Mature_180_residues
SNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVADAFTLFEKFETKLQQFSGNLE
RAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGEVIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYES
LKVAADICVFTNDNIVVETL

Specific function: Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery

COG id: COG5405

COG function: function code O; ATP-dependent protease HslVU (ClpYQ), peptidase subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase T1B family. HslV subfamily

Homologues:

Organism=Escherichia coli, GI1790367, Length=173, Percent_Identity=56.0693641618497, Blast_Score=190, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HSLV_STAA1 (A7X1M9)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441833.1
- ProteinModelPortal:   A7X1M9
- SMR:   A7X1M9
- STRING:   A7X1M9
- EnsemblBacteria:   EBSTAT00000002775
- GeneID:   5561410
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1243
- eggNOG:   COG5405
- GeneTree:   EBGT00050000024129
- HOGENOM:   HBG288822
- OMA:   AADICVY
- ProtClustDB:   PRK05456
- BioCyc:   SAUR418127:SAHV_1243-MONOMER
- HAMAP:   MF_00248
- InterPro:   IPR022281
- InterPro:   IPR001353
- TIGRFAMs:   TIGR03692

Pfam domain/function: PF00227 Proteasome

EC number: 3.4.25.-

Molecular weight: Translated: 19573; Mature: 19441

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: ACT_SITE 9-9

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVA
CCCCEEEEEEEEEEEECCCEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCEEECHHHHHH
DAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCEEEEEECCCC
VIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYESLKVAADICVFTNDNIVVET
EECCCCCEEEEECCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEEECCCEEEEE
L
C
>Mature Secondary Structure 
SNTTLHATTIYAVRHNGKAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVA
CCCEEEEEEEEEEEECCCEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCEEECHHHHHH
DAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILVVSGTGE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCEEEEEECCCC
VIAPDDDLIAIGSGGNYALSAGRALKRHASHLSAEEMAYESLKVAADICVFTNDNIVVET
EECCCCCEEEEECCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEEECCCEEEEE
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA