Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is sdhA [H]
Identifier: 15675924
GI number: 15675924
Start: 1823305
End: 1824177
Strand: Direct
Name: sdhA [H]
Synonym: SPy_2190
Alternate gene names: 15675924
Gene position: 1823305-1824177 (Clockwise)
Preceding gene: 15675923
Following gene: 15675933
Centisome position: 98.43
GC content: 41.47
Gene sequence:
>873_bases ATGTTTTATACTATTGAAGAACTTGTCAAACAAGCTGACCAACAATTTAATGGAAATATTGCTGAACTCATGATTGCCAC GGAAGTGGAGATGTCTGGAAGAAATCGAGAAGATATTATCAAAATCATGTCACGCAATTTACAAGTTATGAAAGCAGCTG TAACAGAAGGACTAACCTCAACCAAATCTATCAGTGGTTTGACAGGGGGCGATGCGGTCAAAATGGATAACTACATTAAA AAAGGGAACAGCCTTTCTGATACTACTATTCTTAATGCTGTTAGAAATGCTATAGCTGTAAACGAATTAAATGCTAAAAT GGGACTTGTCTGTGCAACACCCACTGCAGGAAGTGCAGGATGCTTACCAGCAGTGCTCGCAACAGCTATTGAAAAACTTG ACTTATCAGAAAAAGAACAATTAGAGTTTTTATTTACTGCAGGAGCTTTTGGTCTTGTTATTGGAAATAACGCCTCTATT TCTGGTGCAGAAGGTGGATGCCAAGCAGAAGTTGGTTCTGCAGCTGCTATGAGTGCAGCTGCTCTTGTTAAAGCAGCCGG TGGAACATCTCATCAAGCTAGTCAAGCTATTGCGTTTGTTATCAAAAATTTATTAGGACTTGTCTGTGATCCTGTTGCCG GCCTAGTAGAAGTGCCTTGTGTCAAACGCAATGCCCTAGGAGCAAGTTTCGCCCTTGTCGCAGCTGATATGGCTTTAGCT GATATTGATTCTCAAATTCCTGTTGACGAAGTTATTGATGCTATGTATCAAGTCGGCTCTGCCATGCCAACTGCTTTCCG TGAAACAGCAGAAGGTGGTTTAGCCGCTACTCCAACTGGACGACGTTACAGCGTAGAAATATTTGGCGAATAA
Upstream 100 bases:
>100_bases TTATAGAAGTCGATTCTAGAGAGTGCCAAGAAGCAGCCAACCAAATTGCAAAAATTCCTCATATTTATAATGTCAACTTC TTTGACTAGAAAGGAAAGCT
Downstream 100 bases:
>100_bases ATAGATAGTTAGAAAAATTCTTAGAAATATTTGAAAGCGTTTTATTTTTCTGCTATATATTCACTAAAATGACTAATAGA TAGCTATCAAGCTATGTTGT
Product: putative L-serine dehydratase subunit alpha
Products: NA
Alternate protein names: SDH; L-serine deaminase; L-SD [H]
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MFYTIEELVKQADQQFNGNIAELMIATEVEMSGRNREDIIKIMSRNLQVMKAAVTEGLTSTKSISGLTGGDAVKMDNYIK KGNSLSDTTILNAVRNAIAVNELNAKMGLVCATPTAGSAGCLPAVLATAIEKLDLSEKEQLEFLFTAGAFGLVIGNNASI SGAEGGCQAEVGSAAAMSAAALVKAAGGTSHQASQAIAFVIKNLLGLVCDPVAGLVEVPCVKRNALGASFALVAADMALA DIDSQIPVDEVIDAMYQVGSAMPTAFRETAEGGLAATPTGRRYSVEIFGE
Sequences:
>Translated_290_residues MFYTIEELVKQADQQFNGNIAELMIATEVEMSGRNREDIIKIMSRNLQVMKAAVTEGLTSTKSISGLTGGDAVKMDNYIK KGNSLSDTTILNAVRNAIAVNELNAKMGLVCATPTAGSAGCLPAVLATAIEKLDLSEKEQLEFLFTAGAFGLVIGNNASI SGAEGGCQAEVGSAAAMSAAALVKAAGGTSHQASQAIAFVIKNLLGLVCDPVAGLVEVPCVKRNALGASFALVAADMALA DIDSQIPVDEVIDAMYQVGSAMPTAFRETAEGGLAATPTGRRYSVEIFGE >Mature_290_residues MFYTIEELVKQADQQFNGNIAELMIATEVEMSGRNREDIIKIMSRNLQVMKAAVTEGLTSTKSISGLTGGDAVKMDNYIK KGNSLSDTTILNAVRNAIAVNELNAKMGLVCATPTAGSAGCLPAVLATAIEKLDLSEKEQLEFLFTAGAFGLVIGNNASI SGAEGGCQAEVGSAAAMSAAALVKAAGGTSHQASQAIAFVIKNLLGLVCDPVAGLVEVPCVKRNALGASFALVAADMALA DIDSQIPVDEVIDAMYQVGSAMPTAFRETAEGGLAATPTGRRYSVEIFGE
Specific function: Anaerobic degradation of L-threonine to propionate. [C]
COG id: COG1760
COG function: function code E; L-serine deaminase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-sulfur dependent L-serine dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI48994925, Length=282, Percent_Identity=35.8156028368794, Blast_Score=154, Evalue=8e-39, Organism=Escherichia coli, GI1788116, Length=258, Percent_Identity=36.4341085271318, Blast_Score=144, Evalue=7e-36, Organism=Escherichia coli, GI1789161, Length=269, Percent_Identity=34.5724907063197, Blast_Score=137, Evalue=7e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005130 - InterPro: IPR004642 [H]
Pfam domain/function: PF03313 SDH_alpha [H]
EC number: =4.3.1.17 [H]
Molecular weight: Translated: 29972; Mature: 29972
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: PS00867 CPSASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFYTIEELVKQADQQFNGNIAELMIATEVEMSGRNREDIIKIMSRNLQVMKAAVTEGLTS CCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC TKSISGLTGGDAVKMDNYIKKGNSLSDTTILNAVRNAIAVNELNAKMGLVCATPTAGSAG HHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC CLPAVLATAIEKLDLSEKEQLEFLFTAGAFGLVIGNNASISGAEGGCQAEVGSAAAMSAA HHHHHHHHHHHHHCCCCHHHHHHHEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH ALVKAAGGTSHQASQAIAFVIKNLLGLVCDPVAGLVEVPCVKRNALGASFALVAADMALA HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHH DIDSQIPVDEVIDAMYQVGSAMPTAFRETAEGGLAATPTGRRYSVEIFGE HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCCEEEEEEECC >Mature Secondary Structure MFYTIEELVKQADQQFNGNIAELMIATEVEMSGRNREDIIKIMSRNLQVMKAAVTEGLTS CCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC TKSISGLTGGDAVKMDNYIKKGNSLSDTTILNAVRNAIAVNELNAKMGLVCATPTAGSAG HHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC CLPAVLATAIEKLDLSEKEQLEFLFTAGAFGLVIGNNASISGAEGGCQAEVGSAAAMSAA HHHHHHHHHHHHHCCCCHHHHHHHEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH ALVKAAGGTSHQASQAIAFVIKNLLGLVCDPVAGLVEVPCVKRNALGASFALVAADMALA HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHH DIDSQIPVDEVIDAMYQVGSAMPTAFRETAEGGLAATPTGRRYSVEIFGE HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9534248; 9384377 [H]