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The map label for this gene is sdhB [H]

Identifier: 15675923

GI number: 15675923

Start: 1822622

End: 1823293

Strand: Direct

Name: sdhB [H]

Synonym: SPy_2189

Alternate gene names: 15675923

Gene position: 1822622-1823293 (Clockwise)

Preceding gene: 15675913

Following gene: 15675924

Centisome position: 98.39

GC content: 36.01

Gene sequence:

>672_bases
ATGAATACACAAAAATTTCAATCAGTTTTTGACATCATTGGGCCAGTAATGATTGGTCCATCAAGTAGTCACACAGCTGG
TGCCGTCAGAATTGGTAAGGTAGTCCATTCCATCTTTGGAGATATTCCTGATGAAGTGACGTTTCACCTTTATAATTCAT
TTGCTAAAACCTACAGAGGACATGGTACTGATAAGGCTCTTGTTGCAGGAATTATGGGTATGGGTACTGATAATCCTGAT
ATTAAAAATTCTCTAGAAATTGCTCATCAAAAAGGGATAAAAATCTATTGGGATATCTTAAAAGATAGTAATGCTCCCCA
TCCCAATACTGTTAAAATCAGTGTCAAAAAAGCTGACAAAACACTTAGTGTTACTGGTGTTTCAATTGGAGGAGGAAACA
TTCAAGTAACAGAACTAAATGGTTTTTCTGTCTCGTTATCCATGAATACTCCTACTATAGTTACTGTACACAAAGATATT
CCCGGAATGATCGCAAAGGTAACTGATATCCTATCTTCCAATAATATTAATATCGCCACAATGAATGTTACACGTGAATC
CGCTGGTGAAAAAGCTACTATGATTATAGAAGTCGATTCTAGAGAGTGCCAAGAAGCAGCCAACCAAATTGCAAAAATTC
CTCATATTTATAATGTCAACTTCTTTGACTAG

Upstream 100 bases:

>100_bases
CAATAATTTTTTATTATAAAAATAATTTTTTATAATTATATTGCTGTTTTTTGATATTTTTTTGTTATAATAAACATAGA
AATAAAAAACGGAGTTGCCT

Downstream 100 bases:

>100_bases
AAAGGAAAGCTATGTTTTATACTATTGAAGAACTTGTCAAACAAGCTGACCAACAATTTAATGGAAATATTGCTGAACTC
ATGATTGCCACGGAAGTGGA

Product: putative L-serine dehydratase subunit beta

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNTQKFQSVFDIIGPVMIGPSSSHTAGAVRIGKVVHSIFGDIPDEVTFHLYNSFAKTYRGHGTDKALVAGIMGMGTDNPD
IKNSLEIAHQKGIKIYWDILKDSNAPHPNTVKISVKKADKTLSVTGVSIGGGNIQVTELNGFSVSLSMNTPTIVTVHKDI
PGMIAKVTDILSSNNINIATMNVTRESAGEKATMIIEVDSRECQEAANQIAKIPHIYNVNFFD

Sequences:

>Translated_223_residues
MNTQKFQSVFDIIGPVMIGPSSSHTAGAVRIGKVVHSIFGDIPDEVTFHLYNSFAKTYRGHGTDKALVAGIMGMGTDNPD
IKNSLEIAHQKGIKIYWDILKDSNAPHPNTVKISVKKADKTLSVTGVSIGGGNIQVTELNGFSVSLSMNTPTIVTVHKDI
PGMIAKVTDILSSNNINIATMNVTRESAGEKATMIIEVDSRECQEAANQIAKIPHIYNVNFFD
>Mature_223_residues
MNTQKFQSVFDIIGPVMIGPSSSHTAGAVRIGKVVHSIFGDIPDEVTFHLYNSFAKTYRGHGTDKALVAGIMGMGTDNPD
IKNSLEIAHQKGIKIYWDILKDSNAPHPNTVKISVKKADKTLSVTGVSIGGGNIQVTELNGFSVSLSMNTPTIVTVHKDI
PGMIAKVTDILSSNNINIATMNVTRESAGEKATMIIEVDSRECQEAANQIAKIPHIYNVNFFD

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 24068; Mature: 24068

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQKFQSVFDIIGPVMIGPSSSHTAGAVRIGKVVHSIFGDIPDEVTFHLYNSFAKTYRG
CCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
HGTDKALVAGIMGMGTDNPDIKNSLEIAHQKGIKIYWDILKDSNAPHPNTVKISVKKADK
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEECCC
TLSVTGVSIGGGNIQVTELNGFSVSLSMNTPTIVTVHKDIPGMIAKVTDILSSNNINIAT
EEEEEEEEECCCEEEEEEECCEEEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCEEEE
MNVTRESAGEKATMIIEVDSRECQEAANQIAKIPHIYNVNFFD
EEEECCCCCCEEEEEEEECCHHHHHHHHHHHHCCEEEEEEECC
>Mature Secondary Structure
MNTQKFQSVFDIIGPVMIGPSSSHTAGAVRIGKVVHSIFGDIPDEVTFHLYNSFAKTYRG
CCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
HGTDKALVAGIMGMGTDNPDIKNSLEIAHQKGIKIYWDILKDSNAPHPNTVKISVKKADK
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEECCC
TLSVTGVSIGGGNIQVTELNGFSVSLSMNTPTIVTVHKDIPGMIAKVTDILSSNNINIAT
EEEEEEEEECCCEEEEEEECCEEEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCEEEE
MNVTRESAGEKATMIIEVDSRECQEAANQIAKIPHIYNVNFFD
EEEECCCCCCEEEEEEEECCHHHHHHHHHHHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]