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The map label for this gene is csp

Identifier: 15675836

GI number: 15675836

Start: 1727874

End: 1728077

Strand: Reverse

Name: csp

Synonym: SPy_2077

Alternate gene names: 15675836

Gene position: 1728077-1727874 (Counterclockwise)

Preceding gene: 15675839

Following gene: 15675835

Centisome position: 93.29

GC content: 37.25

Gene sequence:

>204_bases
ATGGCACAAGGTACAGTAAAATGGTTTAATGCTGAAAAAGGTTTTGGTTTTATTTCAACTGAAAACGGTCAAGATGTCTT
TGCACATTTTTCAGCCATCCAAACTAATGGTTTTAAAACGTTAGAAGAAGGACAAAAAGTGGCATTTGACGTCGAAGAAG
GTCAACGTGGACCTCAAGCAGTCAATATCACTAAATTGGCCTAA

Upstream 100 bases:

>100_bases
CTCTTAGTGAGTAAATTAGTTTTTGAGTTAGTATTTGTGTATCAACATCTTTATTTCTCTCTATTTTTACAAATGATTTT
TAGAAAGGAAGTGGATGTAT

Downstream 100 bases:

>100_bases
TCTGGTTAAAGTAACTAAAGAGAAGCAGATGTTGGAAACAGCAACTGCTTTTTTGATTTCTACCAGTTACCTTTAATGAT
TAAGAGTTGCGTTTAAGGTC

Product: putative cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNITKLA

Sequences:

>Translated_67_residues
MAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNITKLA
>Mature_66_residues
AQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNITKLA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=62.5, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=62.5, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=63.0769230769231, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=63.0769230769231, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=60.9375, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=53.7313432835821, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPA_STRP1 (P0C0F1)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_270010.1
- RefSeq:   YP_283128.1
- ProteinModelPortal:   P0C0F1
- SMR:   P0C0F1
- EnsemblBacteria:   EBSTRT00000001664
- EnsemblBacteria:   EBSTRT00000029061
- GeneID:   3571128
- GeneID:   901719
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_2077
- KEGG:   spz:M5005_Spy_1765
- GeneTree:   EBGT00050000027611
- HOGENOM:   HBG717773
- OMA:   FISAENG
- ProtClustDB:   CLSK698961
- BioCyc:   SPYO160490:SPY2077-MONOMER
- BioCyc:   SPYO293653:M5005_SPY1765-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7322; Mature: 7191

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCE
VNITKLA
EEEEECC
>Mature Secondary Structure 
AQGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQA
CCCCEEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCE
VNITKLA
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296