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The map label for this gene is xerD [H]

Identifier: 13474989

GI number: 13474989

Start: 4835100

End: 4835348

Strand: Direct

Name: xerD [H]

Synonym: msr5974

Alternate gene names: 13474989

Gene position: 4835100-4835348 (Clockwise)

Preceding gene: 13474988

Following gene: 13474990

Centisome position: 68.72

GC content: 64.66

Gene sequence:

>249_bases
TTGTACTCGGCCTGCCGCTCGGCGCGTGCAGCCGCCGGCATCGACAAGCGCGTGACAGTCCACACGCTCAGGCACAGCTT
CGCCACGCATTTGCTGGAGAACGGCACCGACATCCGCATCATCCAGGTGCTGCTTGGCCACAACAATCTGTCCTCGACGG
CGCGCTACACCAAGGTCTCGAACGGCCTCATCCGGCGCACGACAAGCCCGCTCGATCGGCTGAACATCGAAGTCGTGCCG
CCGGGCTGA

Upstream 100 bases:

>100_bases
CGCAGCTTCTGCGCATCCTGCGCGTCTACTGGCGGCTGGCGAAGCCAAAGGGCTGGCTGTTTCCGGGCCGGATGCAAATC
GCCCCATCGACGTTCAGGTA

Downstream 100 bases:

>100_bases
TCGGTTCCGCCCATGTCGGCGAGACTGGAGGTGGCGGATATCTTCCGCCGCCATGGCGAGGCGTATCGGCAGGCTCATGA
CGGTCATCTCGGACGCGTCG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MYSACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSNGLIRRTTSPLDRLNIEVVP
PG

Sequences:

>Translated_82_residues
MYSACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSNGLIRRTTSPLDRLNIEVVP
PG
>Mature_82_residues
MYSACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSNGLIRRTTSPLDRLNIEVVP
PG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=56, Percent_Identity=51.7857142857143, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 9024; Mature: 9024

Theoretical pI: Translated: 11.33; Mature: 11.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVS
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHC
NGLIRRTTSPLDRLNIEVVPPG
CCEEECCCCCHHHCEEEEECCC
>Mature Secondary Structure
MYSACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVS
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHC
NGLIRRTTSPLDRLNIEVVPPG
CCEEECCCCCHHHCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA