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The map label for this gene is xerD [C]

Identifier: 13474988

GI number: 13474988

Start: 4834291

End: 4835154

Strand: Direct

Name: xerD [C]

Synonym: mlr5973

Alternate gene names: 13474988

Gene position: 4834291-4835154 (Clockwise)

Preceding gene: 13474987

Following gene: 13474989

Centisome position: 68.71

GC content: 66.78

Gene sequence:

>864_bases
ATGAGGTTCGCTTTCATCGCGAGGCACCGGAACATCTGGCCGGTGGCGTGGCTGTGCGACGCGCTGGACGTATCCCGCTC
AGGCTTCCATGCCTGGCTCAACCGCAGCCCCAGCGCTCGCTCCCGGCACGACGAGGTGCTCGTCGCCCAGATCGACCGAA
GCTTCAAGAGCAGCGACCGCACCTATGGCGCCCGCCGCGTCTGGCACGACTTATTGGCGGAAGGCCTATCTTGCGGTCTG
CATCGCATCGAACGGCTGATGCGGGAGAACGGCCTGCGTGCACGTCCACGCCGACGTGGGCTGCCGAAGGATACGGGCGA
GCGAGCGGCAGTGTCGGACAACCTCCTCGACCGCGCCTTCCAGGTGCATCTGGTCTCGACCGGAATCTCGTGGCCGGCGC
TGAACCAGACGGTGTGCGCACTGCGGTTCTTTTGCGGCGTGACGTTGGGTCATGCCGAGATCCCTGAGCGGATCGCCTAT
GCCCGCGCTCCACGCACGCTGCCGGTGGTTCTCAGCGCCGACGAGGTTGTCCGCTTTCTCGAGGCGGTGCCGAGCCTGAA
GACGCGCACCGCCTTGACGACGGCCTATGCCGCCGGCCTTCGCGCTTCGGAGACCGTCGGGCTGAAGGTCAGCGACATCG
ATAGCGAACGCGGCGTCATCCGGGTCGAGCACGGCAAGGGCGGCAAGGACCGCACCGTGATGCTGTCGGCGCAGCTTCTG
CGCATCCTGCGCGTCTACTGGCGGCTGGCGAAGCCAAAGGGCTGGCTGTTTCCGGGCCGGATGCAAATCGCCCCATCGAC
GTTCAGGTATTGTACTCGGCCTGCCGCTCGGCGCGTGCAGCCGCCGGCATCGACAAGCGCGTGA

Upstream 100 bases:

>100_bases
AGCAGCTCGAGATTGACCGGCTGCGCAAGGAAGTGGCGAAGCTGAAGGCGGAGCGCGACATCCTAAAAAAGGCCGCAGCC
TACTTCGCGAGGGAAGTGAC

Downstream 100 bases:

>100_bases
CAGTCCACACGCTCAGGCACAGCTTCGCCACGCATTTGCTGGAGAACGGCACCGACATCCGCATCATCCAGGTGCTGCTT
GGCCACAACAATCTGTCCTC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRFAFIARHRNIWPVAWLCDALDVSRSGFHAWLNRSPSARSRHDEVLVAQIDRSFKSSDRTYGARRVWHDLLAEGLSCGL
HRIERLMRENGLRARPRRRGLPKDTGERAAVSDNLLDRAFQVHLVSTGISWPALNQTVCALRFFCGVTLGHAEIPERIAY
ARAPRTLPVVLSADEVVRFLEAVPSLKTRTALTTAYAAGLRASETVGLKVSDIDSERGVIRVEHGKGGKDRTVMLSAQLL
RILRVYWRLAKPKGWLFPGRMQIAPSTFRYCTRPAARRVQPPASTSA

Sequences:

>Translated_287_residues
MRFAFIARHRNIWPVAWLCDALDVSRSGFHAWLNRSPSARSRHDEVLVAQIDRSFKSSDRTYGARRVWHDLLAEGLSCGL
HRIERLMRENGLRARPRRRGLPKDTGERAAVSDNLLDRAFQVHLVSTGISWPALNQTVCALRFFCGVTLGHAEIPERIAY
ARAPRTLPVVLSADEVVRFLEAVPSLKTRTALTTAYAAGLRASETVGLKVSDIDSERGVIRVEHGKGGKDRTVMLSAQLL
RILRVYWRLAKPKGWLFPGRMQIAPSTFRYCTRPAARRVQPPASTSA
>Mature_287_residues
MRFAFIARHRNIWPVAWLCDALDVSRSGFHAWLNRSPSARSRHDEVLVAQIDRSFKSSDRTYGARRVWHDLLAEGLSCGL
HRIERLMRENGLRARPRRRGLPKDTGERAAVSDNLLDRAFQVHLVSTGISWPALNQTVCALRFFCGVTLGHAEIPERIAY
ARAPRTLPVVLSADEVVRFLEAVPSLKTRTALTTAYAAGLRASETVGLKVSDIDSERGVIRVEHGKGGKDRTVMLSAQLL
RILRVYWRLAKPKGWLFPGRMQIAPSTFRYCTRPAARRVQPPASTSA

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=107, Percent_Identity=40.1869158878505, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32244; Mature: 32244

Theoretical pI: Translated: 11.59; Mature: 11.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFAFIARHRNIWPVAWLCDALDVSRSGFHAWLNRSPSARSRHDEVLVAQIDRSFKSSDR
CCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCH
TYGARRVWHDLLAEGLSCGLHRIERLMRENGLRARPRRRGLPKDTGERAAVSDNLLDRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
QVHLVSTGISWPALNQTVCALRFFCGVTLGHAEIPERIAYARAPRTLPVVLSADEVVRFL
EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHH
EAVPSLKTRTALTTAYAAGLRASETVGLKVSDIDSERGVIRVEHGKGGKDRTVMLSAQLL
HHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCEEEHHHHHH
RILRVYWRLAKPKGWLFPGRMQIAPSTFRYCTRPAARRVQPPASTSA
HHHHHHHHHCCCCCCCCCCCEEECCHHHHHHCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MRFAFIARHRNIWPVAWLCDALDVSRSGFHAWLNRSPSARSRHDEVLVAQIDRSFKSSDR
CCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCH
TYGARRVWHDLLAEGLSCGLHRIERLMRENGLRARPRRRGLPKDTGERAAVSDNLLDRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
QVHLVSTGISWPALNQTVCALRFFCGVTLGHAEIPERIAYARAPRTLPVVLSADEVVRFL
EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHH
EAVPSLKTRTALTTAYAAGLRASETVGLKVSDIDSERGVIRVEHGKGGKDRTVMLSAQLL
HHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCEEEHHHHHH
RILRVYWRLAKPKGWLFPGRMQIAPSTFRYCTRPAARRVQPPASTSA
HHHHHHHHHCCCCCCCCCCCEEECCHHHHHHCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]