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The map label for this gene is ybiH [H]

Identifier: 13473858

GI number: 13473858

Start: 3646333

End: 3647073

Strand: Direct

Name: ybiH [H]

Synonym: mlr4593

Alternate gene names: 13473858

Gene position: 3646333-3647073 (Clockwise)

Preceding gene: 13473854

Following gene: 13473859

Centisome position: 51.82

GC content: 66.13

Gene sequence:

>741_bases
ATGATCAAATTGCCCGACGCTAAAAGTTCACGCCGCGAGACATCACCGGAGCTGACGCGTGCCGTACTCGTGCAGGCGGC
GCTGAAACTGTTCGGCCGGCAGGGTTTCGACGGCACCTCGACCCGTGAGATCGCGGCCGAGGCGCAGGCCAATATCGGCT
CGATCGCCTATCATTTCGGCGGTAAGGAAGGCCTCCGCGCCGCCGTCGCCGACTATATCGTCGAGACCGTTCAGGCGGTT
GCCGGCCGGGCACTGGCCGCCGGCCAGGCGCCAGGCAGTGGCCAGGCCGCGCCTGCGGGCGATCCCGAGGCGGCGCGCGC
GCAGCTTTTCGCCGCGATAGAGGGGATCGTCGGCTTCGTCGTGGCGCAGCCGCACGCCGGCGAGATCGTGCAGTTCTTGC
TGCGCGAACTGCAGCATCCTACCGCTGCGCTCGACCGCATCTATGACGGTGTGTTCGAGCCGACGCATCGCCGGCTGTGC
CATCTCTGGGAGCAGGCGACCGGCGAGCCGGCCGAAAGCGAGCGGACCCGGCTCACCGTGTTCACGCTGATCGGCCAGGT
CGTCTATTTCCGCATCGGTCGCGAGGCGGTGAAGCGCCGCATGGGCTGGCACGACATCGGCGCCGCCGAGGCCGCCAAGG
TCGTGGCGGTCACCACGGACAATCTCAGCGCCATACTGGCCGCCCGAATGGGATCAAAACCCAAAATGGGATCAAAACCC
CCAATTGGATCAAAACAATGA

Upstream 100 bases:

>100_bases
CCTTGCCCATGGCAGCGCACTAAAGCGTTTGGCGCGGGCGATGGCAAGACGGCTCTGAACACAAGTTGACTTTAATCAAT
CGATTGATTAAAGTCTGCCC

Downstream 100 bases:

>100_bases
GTTTCCTCTGCTCCTTGCCGCTTGCCGCGAAGCTCCTCAGTGCCTGTGCGCCCGCCGCGCCACTCGCCGTCGGCTATGTC
GAGGGCGACTATGTGCTGCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MIKLPDAKSSRRETSPELTRAVLVQAALKLFGRQGFDGTSTREIAAEAQANIGSIAYHFGGKEGLRAAVADYIVETVQAV
AGRALAAGQAPGSGQAAPAGDPEAARAQLFAAIEGIVGFVVAQPHAGEIVQFLLRELQHPTAALDRIYDGVFEPTHRRLC
HLWEQATGEPAESERTRLTVFTLIGQVVYFRIGREAVKRRMGWHDIGAAEAAKVVAVTTDNLSAILAARMGSKPKMGSKP
PIGSKQ

Sequences:

>Translated_246_residues
MIKLPDAKSSRRETSPELTRAVLVQAALKLFGRQGFDGTSTREIAAEAQANIGSIAYHFGGKEGLRAAVADYIVETVQAV
AGRALAAGQAPGSGQAAPAGDPEAARAQLFAAIEGIVGFVVAQPHAGEIVQFLLRELQHPTAALDRIYDGVFEPTHRRLC
HLWEQATGEPAESERTRLTVFTLIGQVVYFRIGREAVKRRMGWHDIGAAEAAKVVAVTTDNLSAILAARMGSKPKMGSKP
PIGSKQ
>Mature_246_residues
MIKLPDAKSSRRETSPELTRAVLVQAALKLFGRQGFDGTSTREIAAEAQANIGSIAYHFGGKEGLRAAVADYIVETVQAV
AGRALAAGQAPGSGQAAPAGDPEAARAQLFAAIEGIVGFVVAQPHAGEIVQFLLRELQHPTAALDRIYDGVFEPTHRRLC
HLWEQATGEPAESERTRLTVFTLIGQVVYFRIGREAVKRRMGWHDIGAAEAAKVVAVTTDNLSAILAARMGSKPKMGSKP
PIGSKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=208, Percent_Identity=32.6923076923077, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26204; Mature: 26204

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLPDAKSSRRETSPELTRAVLVQAALKLFGRQGFDGTSTREIAAEAQANIGSIAYHFG
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHEECC
GKEGLRAAVADYIVETVQAVAGRALAAGQAPGSGQAAPAGDPEAARAQLFAAIEGIVGFV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VAQPHAGEIVQFLLRELQHPTAALDRIYDGVFEPTHRRLCHLWEQATGEPAESERTRLTV
HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
FTLIGQVVYFRIGREAVKRRMGWHDIGAAEAAKVVAVTTDNLSAILAARMGSKPKMGSKP
HHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCCC
PIGSKQ
CCCCCC
>Mature Secondary Structure
MIKLPDAKSSRRETSPELTRAVLVQAALKLFGRQGFDGTSTREIAAEAQANIGSIAYHFG
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHEECC
GKEGLRAAVADYIVETVQAVAGRALAAGQAPGSGQAAPAGDPEAARAQLFAAIEGIVGFV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VAQPHAGEIVQFLLRELQHPTAALDRIYDGVFEPTHRRLCHLWEQATGEPAESERTRLTV
HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
FTLIGQVVYFRIGREAVKRRMGWHDIGAAEAAKVVAVTTDNLSAILAARMGSKPKMGSKP
HHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCCC
PIGSKQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]