| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is linX [H]
Identifier: 13473534
GI number: 13473534
Start: 3328527
End: 3329294
Strand: Direct
Name: linX [H]
Synonym: mlr4172
Alternate gene names: 13473534
Gene position: 3328527-3329294 (Clockwise)
Preceding gene: 13473531
Following gene: 13473542
Centisome position: 47.31
GC content: 66.8
Gene sequence:
>768_bases ATGGGCGAAAGACTGGCCGGCAAGGTCGCCATCATCTCGGGCGGCGCGACGGGAATGGGCGGCGCGGCTTCTGAGTTGTT CGCGGCCGAAGGCGCCAAGGTGGCGATCATCGACCGCAATGGGGAGGCAGCCGCTGCCACGGCAGCGGCGATACGCGCGC GGGGCCGTGTCGCCGAGCATTTTGTCGCCGACGTGTCCGACGAGGCGCAGGTCCAGGCGGCGGTGAAGGGCGCGACCGAA AAACTCGGGCCTGTCACGGTGTTGTTCAATCACGCCGGCACCATCGTGATCAAACCGTTCCTGGAGACGACCGTGCAGGA ATGGGACTGGCTGCATGCGGTCAACGTGCGCTCGATGTTCCTGATGACGCGTGCCGTGCTGCCCGGCATGATCGCGGCGG GCGGCGGCTCGATCGTCTGCACCTCGTCGATCTCGGCTGTGGCGGCAACACCGATGGAGGTGCTCTACGACACCACCAAG GGCGCCTGCCACATGTTCGCGCGCGCCATCGCGGTGGAGTTCCGTGACCGCAACATCCGCTGCAACGCCGTCTGCCCCGG CTTTATCAGGACGCCGCACGGCCTGCGCGAGGTCGCCGACCTCGGCAAGCTCGGCGTCGACGTTTCGGACGCGGCATTGG CGGCACAGCAGGGCCGCATCGGCGAGCCGGAAGAGGTGGCCAAGGCTGCCCTGTATTTGGCCAGCGACGAGTCGAGCTTC GTCAACGGCGCGCATCTGTTCGTGGACAATGGCTTTACGGCGATGTGA
Upstream 100 bases:
>100_bases GTTCCCCCTGCACCCAATTGGTCCATTGGCCGCCTTGTGCGGGCGCGGTAGCATCGCCCGATAAGCAAACGCGAACTGGA TCGAACGGGGAGTAAAAAGC
Downstream 100 bases:
>100_bases GGGCGTCCCAGGCCAGCTTGGCGCCCTTCCTCTCCCCCGTCGATCGGCGGAGAGGTGTCGAGCGCAGCTCGACGGAGTGG GGGTCGACCCTTGGCGCGGT
Product: short-chain dehydrogenase
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MGERLAGKVAIISGGATGMGGAASELFAAEGAKVAIIDRNGEAAAATAAAIRARGRVAEHFVADVSDEAQVQAAVKGATE KLGPVTVLFNHAGTIVIKPFLETTVQEWDWLHAVNVRSMFLMTRAVLPGMIAAGGGSIVCTSSISAVAATPMEVLYDTTK GACHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLGKLGVDVSDAALAAQQGRIGEPEEVAKAALYLASDESSF VNGAHLFVDNGFTAM
Sequences:
>Translated_255_residues MGERLAGKVAIISGGATGMGGAASELFAAEGAKVAIIDRNGEAAAATAAAIRARGRVAEHFVADVSDEAQVQAAVKGATE KLGPVTVLFNHAGTIVIKPFLETTVQEWDWLHAVNVRSMFLMTRAVLPGMIAAGGGSIVCTSSISAVAATPMEVLYDTTK GACHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLGKLGVDVSDAALAAQQGRIGEPEEVAKAALYLASDESSF VNGAHLFVDNGFTAM >Mature_254_residues GERLAGKVAIISGGATGMGGAASELFAAEGAKVAIIDRNGEAAAATAAAIRARGRVAEHFVADVSDEAQVQAAVKGATEK LGPVTVLFNHAGTIVIKPFLETTVQEWDWLHAVNVRSMFLMTRAVLPGMIAAGGGSIVCTSSISAVAATPMEVLYDTTKG ACHMFARAIAVEFRDRNIRCNAVCPGFIRTPHGLREVADLGKLGVDVSDAALAAQQGRIGEPEEVAKAALYLASDESSFV NGAHLFVDNGFTAM
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=35.4581673306773, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=29.4820717131474, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=33.2, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=31.4741035856574, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=28.0632411067194, Blast_Score=94, Evalue=9e-20, Organism=Homo sapiens, GI15277342, Length=267, Percent_Identity=29.5880149812734, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=27.8947368421053, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=30.7291666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=25.8964143426295, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=28.4974093264249, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=28.6343612334802, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=28.6458333333333, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI226371731, Length=189, Percent_Identity=30.1587301587302, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI20149619, Length=237, Percent_Identity=29.1139240506329, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI33667109, Length=206, Percent_Identity=30.0970873786408, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=25.5208333333333, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI310128830, Length=200, Percent_Identity=27, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI310115468, Length=200, Percent_Identity=27, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI126723191, Length=201, Percent_Identity=28.3582089552239, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31543615, Length=162, Percent_Identity=28.3950617283951, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7705855, Length=191, Percent_Identity=24.0837696335079, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI40254986, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.8449612403101, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI4503301, Length=257, Percent_Identity=26.4591439688716, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI209862901, Length=199, Percent_Identity=27.6381909547739, Blast_Score=64, Evalue=1e-10, Organism=Homo sapiens, GI19923983, Length=199, Percent_Identity=27.6381909547739, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=35.5731225296443, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=32, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=29.0322580645161, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.5301204819277, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=32.2314049586777, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=33.8709677419355, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=29.4820717131474, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=29.4820717131474, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=28.4584980237154, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=25.9541984732824, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=29.3650793650794, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787526, Length=215, Percent_Identity=27.906976744186, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=37.9446640316205, Blast_Score=127, Evalue=6e-30, Organism=Caenorhabditis elegans, GI17561402, Length=265, Percent_Identity=32.8301886792453, Blast_Score=118, Evalue=4e-27, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=31.5789473684211, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=32.1138211382114, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=33.976833976834, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=31.6793893129771, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=27.3408239700375, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=26.953125, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=30.4511278195489, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.1666666666667, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=30.1115241635688, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=29.5454545454545, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=28.3524904214559, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=31.6062176165803, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=28.6259541984733, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=29.8507462686567, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=28.6245353159851, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=27.5862068965517, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=28.5185185185185, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.5970149253731, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=27.8195488721804, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.0769230769231, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=32.1428571428571, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.0836653386454, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=26.1363636363636, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=24.7368421052632, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203115, Length=187, Percent_Identity=25.1336898395722, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.979274611399, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=31.640625, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=28.7449392712551, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=28.6458333333333, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=25.2631578947368, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.4822134387352, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=34.9397590361446, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=34.136546184739, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=32.6612903225806, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=35.8565737051793, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=30.8300395256917, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=32.0158102766798, Blast_Score=107, Evalue=5e-24, Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=7e-21, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=28.515625, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=29.5336787564767, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=30.7291666666667, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24581726, Length=191, Percent_Identity=29.8429319371728, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24640492, Length=189, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI21355631, Length=235, Percent_Identity=26.3829787234043, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=27.8350515463918, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=30.6034482758621, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=26.8041237113402, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=26.8041237113402, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=28.2722513089005, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI221510726, Length=191, Percent_Identity=29.8429319371728, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26442; Mature: 26310
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGERLAGKVAIISGGATGMGGAASELFAAEGAKVAIIDRNGEAAAATAAAIRARGRVAEH CCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHH FVADVSDEAQVQAAVKGATEKLGPVTVLFNHAGTIVIKPFLETTVQEWDWLHAVNVRSMF HHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHH LMTRAVLPGMIAAGGGSIVCTSSISAVAATPMEVLYDTTKGACHMFARAIAVEFRDRNIR HHHHHHHCCCEECCCCCEEEECCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHEECCCCEE CNAVCPGFIRTPHGLREVADLGKLGVDVSDAALAAQQGRIGEPEEVAKAALYLASDESSF EEEECCCHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHEEECCCCCC VNGAHLFVDNGFTAM CCCEEEEEECCCCCC >Mature Secondary Structure GERLAGKVAIISGGATGMGGAASELFAAEGAKVAIIDRNGEAAAATAAAIRARGRVAEH CCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHH FVADVSDEAQVQAAVKGATEKLGPVTVLFNHAGTIVIKPFLETTVQEWDWLHAVNVRSMF HHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHH LMTRAVLPGMIAAGGGSIVCTSSISAVAATPMEVLYDTTKGACHMFARAIAVEFRDRNIR HHHHHHHCCCEECCCCCEEEECCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHEECCCCEE CNAVCPGFIRTPHGLREVADLGKLGVDVSDAALAAQQGRIGEPEEVAKAALYLASDESSF EEEECCCHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHEEECCCCCC VNGAHLFVDNGFTAM CCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]