Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 13472078

GI number: 13472078

Start: 1816212

End: 1816733

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: mll2257

Alternate gene names: 13472078

Gene position: 1816733-1816212 (Counterclockwise)

Preceding gene: 13472079

Following gene: 13472077

Centisome position: 25.82

GC content: 61.49

Gene sequence:

>522_bases
ATGACCATTCGTGATCTCATGCCATGGGGCCGCGACACCAGCCAGTCTCCGACCCTCTTTCGCGAAGGCGATCGGGACCC
GTTCATGGGCCTGCATCGCGAGATGAGCCGCCTGGTCGACGACATGTTCCGCGGCTTCGAGTCGCGGCTTCCGTCCATGG
GCAGGTTCTCTTTGGCCGGCACCGGTTGGCCCAGCGTGGAAATCTCCGAAACGGACAAGGATATCCGCGTCACAGCCGAG
ATACCCGGCATGGAGGAGAAGGACATCGAGGTGTTGCTCGATGACGGCGTCCTGACGTTGCGCGGCGAAAAACACTCCGA
AACCGACGACAAGGAGCGTCAGTTCTCCGAGCGGTTCTATGGCCGCTTCGAACGTCGCATCCCGATCGGCTTCGAAGTCG
CGGAGGACAAGGTCGCCGCCGATTTCCGCAACGGCGTACTGTCCGTGAGCTTGCCGAAGTCCGAGAAGGCGCAGAGCAAG
GCAAAGCGCATCCCCATCGGTGGCAAGAGCACCAAGCATTAG

Upstream 100 bases:

>100_bases
GGGGAGCGATGCCGGCTTCAGACGGCGCGTTGTCCTCCGGAGCATGGCAGCCAGAGCATACAAACGTGCCAAAAACAGGA
TCAAGAAAGGAGAAAGTGCA

Downstream 100 bases:

>100_bases
AACAGACCTGCCGGGCGTGCGTGCCGCGCACGCCCGGCATTGACCGGCGGATTTCGCGCCGGTCGCCCTTGAGAATCCCC
CAGCCTTCGGCAACATGGCG

Product: small heat shock protein HspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTIRDLMPWGRDTSQSPTLFREGDRDPFMGLHREMSRLVDDMFRGFESRLPSMGRFSLAGTGWPSVEISETDKDIRVTAE
IPGMEEKDIEVLLDDGVLTLRGEKHSETDDKERQFSERFYGRFERRIPIGFEVAEDKVAADFRNGVLSVSLPKSEKAQSK
AKRIPIGGKSTKH

Sequences:

>Translated_173_residues
MTIRDLMPWGRDTSQSPTLFREGDRDPFMGLHREMSRLVDDMFRGFESRLPSMGRFSLAGTGWPSVEISETDKDIRVTAE
IPGMEEKDIEVLLDDGVLTLRGEKHSETDDKERQFSERFYGRFERRIPIGFEVAEDKVAADFRNGVLSVSLPKSEKAQSK
AKRIPIGGKSTKH
>Mature_172_residues
TIRDLMPWGRDTSQSPTLFREGDRDPFMGLHREMSRLVDDMFRGFESRLPSMGRFSLAGTGWPSVEISETDKDIRVTAEI
PGMEEKDIEVLLDDGVLTLRGEKHSETDDKERQFSERFYGRFERRIPIGFEVAEDKVAADFRNGVLSVSLPKSEKAQSKA
KRIPIGGKSTKH

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19709; Mature: 19577

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRDLMPWGRDTSQSPTLFREGDRDPFMGLHREMSRLVDDMFRGFESRLPSMGRFSLAG
CCCHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
TGWPSVEISETDKDIRVTAEIPGMEEKDIEVLLDDGVLTLRGEKHSETDDKERQFSERFY
CCCCCEEECCCCCCEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHH
GRFERRIPIGFEVAEDKVAADFRNGVLSVSLPKSEKAQSKAKRIPIGGKSTKH
HHHHCCCCCCEEECHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TIRDLMPWGRDTSQSPTLFREGDRDPFMGLHREMSRLVDDMFRGFESRLPSMGRFSLAG
CCHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
TGWPSVEISETDKDIRVTAEIPGMEEKDIEVLLDDGVLTLRGEKHSETDDKERQFSERFY
CCCCCEEECCCCCCEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHH
GRFERRIPIGFEVAEDKVAADFRNGVLSVSLPKSEKAQSKAKRIPIGGKSTKH
HHHHCCCCCCEEECHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA