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The map label for this gene is ybbK [C]

Identifier: 13471831

GI number: 13471831

Start: 1588698

End: 1589462

Strand: Reverse

Name: ybbK [C]

Synonym: mll1932

Alternate gene names: 13471831

Gene position: 1589462-1588698 (Counterclockwise)

Preceding gene: 13471832

Following gene: 13471830

Centisome position: 22.59

GC content: 63.66

Gene sequence:

>765_bases
ATGATGGTTGGTTATGTGGCCTATCTGGTCGTTGCGCTGGTCGTGATCATGTTCTTGTCCGCGGCCGTCCGTATCCTCCG
GGAATATCAGCGCGGCGTGGTCTTCACGCTCGGCCGCTTCACCGGGGTGAAGGGTCCCGGCCTCATCATCCTCGTCCCCT
TCGTGCAGCAGATGGTGAAGGTCGACCTGCGGGTGGTGGTGCAGGATGTGCCGCCGCAGGACGTGATTTCGCGCGACAAC
GTCTCGGTGAAGGTGAACGCGGTGCTCTATTTCCGAATCGTCGACGCCGAGCGCGCGATCATCCAGGTCGAGGACTACAT
GGCCGCCACCAACCAGCTGGCGCAAACCACGCTGCGCTCGGTGCTCGGCAAGCACGAGCTCGACGAGATGCTGGCCGAAC
GCGACAAGCTCAACAGCGACATCCAGGAAATCCTCGACCAGCGCACCGACGCCTGGGGCATCAAGGTGTCGAATGTCGAG
ATCAAGCATGTCGACCTGAACGAGAGCATGATCCGCGCCATCGCCAAGCAGGCCGAGGCCGAGCGGCTGCGGCGCGCCAA
GGTGATCAATGCCGATGGCGAGCAGCAGGCGGCGGCGAAACTGGTCGAGGCGGGCCGGATGCTGGCGGCCGAACCGCAGG
CCATGCAACTGCGCTATTTCGAGGCCCTGCACGACATTGCCGGCGAGCGCTCGTCGACGGTGGTGTTCCCGCTGCCGGTG
GATCTGCTCAGCCAGTTCATGAAGGGGCAGGGTGAGGCGAAGTAA

Upstream 100 bases:

>100_bases
CCGAACCGATCGTGGCCGGCGACAGCGTCGAGGTGACTGACATCAGCGACCTCGTGCTCACCGTGCGGCGGCGCGATCCG
GGAAGGAATGGAGCAAGGCA

Downstream 100 bases:

>100_bases
AAACCAGCGGAGCCCAGTCGCACAGCCGTCGCAAAATCGCCGCTCTTGCAGGGAATCGTACGGTCGGAGCTGCGTGGCAC
GCGGGGGGAGAAGCCATGAT

Product: stomatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MMVGYVAYLVVALVVIMFLSAAVRILREYQRGVVFTLGRFTGVKGPGLIILVPFVQQMVKVDLRVVVQDVPPQDVISRDN
VSVKVNAVLYFRIVDAERAIIQVEDYMAATNQLAQTTLRSVLGKHELDEMLAERDKLNSDIQEILDQRTDAWGIKVSNVE
IKHVDLNESMIRAIAKQAEAERLRRAKVINADGEQQAAAKLVEAGRMLAAEPQAMQLRYFEALHDIAGERSSTVVFPLPV
DLLSQFMKGQGEAK

Sequences:

>Translated_254_residues
MMVGYVAYLVVALVVIMFLSAAVRILREYQRGVVFTLGRFTGVKGPGLIILVPFVQQMVKVDLRVVVQDVPPQDVISRDN
VSVKVNAVLYFRIVDAERAIIQVEDYMAATNQLAQTTLRSVLGKHELDEMLAERDKLNSDIQEILDQRTDAWGIKVSNVE
IKHVDLNESMIRAIAKQAEAERLRRAKVINADGEQQAAAKLVEAGRMLAAEPQAMQLRYFEALHDIAGERSSTVVFPLPV
DLLSQFMKGQGEAK
>Mature_254_residues
MMVGYVAYLVVALVVIMFLSAAVRILREYQRGVVFTLGRFTGVKGPGLIILVPFVQQMVKVDLRVVVQDVPPQDVISRDN
VSVKVNAVLYFRIVDAERAIIQVEDYMAATNQLAQTTLRSVLGKHELDEMLAERDKLNSDIQEILDQRTDAWGIKVSNVE
IKHVDLNESMIRAIAKQAEAERLRRAKVINADGEQQAAAKLVEAGRMLAAEPQAMQLRYFEALHDIAGERSSTVVFPLPV
DLLSQFMKGQGEAK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=248, Percent_Identity=44.3548387096774, Blast_Score=199, Evalue=3e-51,
Organism=Homo sapiens, GI21686995, Length=248, Percent_Identity=44.3548387096774, Blast_Score=198, Evalue=3e-51,
Organism=Homo sapiens, GI38016911, Length=250, Percent_Identity=42.8, Blast_Score=198, Evalue=4e-51,
Organism=Homo sapiens, GI7657615, Length=246, Percent_Identity=33.739837398374, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI7305503, Length=198, Percent_Identity=37.3737373737374, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI20149563, Length=161, Percent_Identity=32.9192546583851, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1786697, Length=198, Percent_Identity=38.3838383838384, Blast_Score=139, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI71987612, Length=245, Percent_Identity=44.8979591836735, Blast_Score=211, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI25153583, Length=245, Percent_Identity=44.8979591836735, Blast_Score=211, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI71987621, Length=245, Percent_Identity=44.8979591836735, Blast_Score=211, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI17569499, Length=250, Percent_Identity=43.2, Blast_Score=210, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17569493, Length=253, Percent_Identity=41.501976284585, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17570459, Length=248, Percent_Identity=41.9354838709677, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI193209764, Length=251, Percent_Identity=41.4342629482072, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17570161, Length=241, Percent_Identity=44.3983402489627, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI193210507, Length=241, Percent_Identity=44.3983402489627, Blast_Score=201, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI71989948, Length=229, Percent_Identity=44.5414847161572, Blast_Score=187, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17569497, Length=241, Percent_Identity=39.0041493775934, Blast_Score=181, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=237, Percent_Identity=42.1940928270042, Blast_Score=180, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=179, Percent_Identity=48.0446927374302, Blast_Score=153, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI71989963, Length=123, Percent_Identity=49.5934959349593, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI32564147, Length=186, Percent_Identity=34.4086021505376, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17542664, Length=192, Percent_Identity=23.9583333333333, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI45556022, Length=250, Percent_Identity=44.4, Blast_Score=210, Evalue=9e-55,
Organism=Drosophila melanogaster, GI62484448, Length=246, Percent_Identity=45.9349593495935, Blast_Score=205, Evalue=2e-53,
Organism=Drosophila melanogaster, GI24657857, Length=246, Percent_Identity=45.9349593495935, Blast_Score=205, Evalue=3e-53,
Organism=Drosophila melanogaster, GI281365664, Length=246, Percent_Identity=45.9349593495935, Blast_Score=205, Evalue=3e-53,
Organism=Drosophila melanogaster, GI62484274, Length=246, Percent_Identity=45.9349593495935, Blast_Score=204, Evalue=4e-53,
Organism=Drosophila melanogaster, GI18860517, Length=252, Percent_Identity=42.8571428571429, Blast_Score=204, Evalue=5e-53,
Organism=Drosophila melanogaster, GI21356845, Length=246, Percent_Identity=36.1788617886179, Blast_Score=184, Evalue=4e-47,
Organism=Drosophila melanogaster, GI28573263, Length=245, Percent_Identity=36.734693877551, Blast_Score=175, Evalue=2e-44,
Organism=Drosophila melanogaster, GI281361631, Length=243, Percent_Identity=34.9794238683128, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281361633, Length=243, Percent_Identity=34.9794238683128, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=37.2972972972973, Blast_Score=134, Evalue=7e-32,
Organism=Drosophila melanogaster, GI45550506, Length=185, Percent_Identity=38.9189189189189, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28332; Mature: 28332

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVGYVAYLVVALVVIMFLSAAVRILREYQRGVVFTLGRFTGVKGPGLIILVPFVQQMVK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCEEEHHHHHHHHH
VDLRVVVQDVPPQDVISRDNVSVKVNAVLYFRIVDAERAIIQVEDYMAATNQLAQTTLRS
HHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VLGKHELDEMLAERDKLNSDIQEILDQRTDAWGIKVSNVEIKHVDLNESMIRAIAKQAEA
HHCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECEEEEEECCCHHHHHHHHHHHHH
ERLRRAKVINADGEQQAAAKLVEAGRMLAAEPQAMQLRYFEALHDIAGERSSTVVFPLPV
HHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
DLLSQFMKGQGEAK
HHHHHHHCCCCCCC
>Mature Secondary Structure
MMVGYVAYLVVALVVIMFLSAAVRILREYQRGVVFTLGRFTGVKGPGLIILVPFVQQMVK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCEEEHHHHHHHHH
VDLRVVVQDVPPQDVISRDNVSVKVNAVLYFRIVDAERAIIQVEDYMAATNQLAQTTLRS
HHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VLGKHELDEMLAERDKLNSDIQEILDQRTDAWGIKVSNVEIKHVDLNESMIRAIAKQAEA
HHCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECEEEEEECCCHHHHHHHHHHHHH
ERLRRAKVINADGEQQAAAKLVEAGRMLAAEPQAMQLRYFEALHDIAGERSSTVVFPLPV
HHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCH
DLLSQFMKGQGEAK
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]