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The map label for this gene is radC [C]

Identifier: 13471076

GI number: 13471076

Start: 778023

End: 778562

Strand: Direct

Name: radC [C]

Synonym: mlr0956

Alternate gene names: 13471076

Gene position: 778023-778562 (Clockwise)

Preceding gene: 13471075

Following gene: 13471077

Centisome position: 11.06

GC content: 63.7

Gene sequence:

>540_bases
TTGCGCGAGCGCTTTGCCTCGGCGGGTGCAGACGCTCTGCCCGATTATGAACTTCTGGAACTCTTGCTCTTCCGGCTGAT
CCCGCGCGCCGACACCAAGCCTGCCGCCAAGGCGTTGCTGGCGCGCTTCGGCACGTTGGCGGAAGTGCTTGGCGCGCCGG
TCAACCTGCTGCAGGAGGTCAAGGGCATCGGCCCGGCGGTGGCGCTCGACCTGAAGGTTGTCGCGGCGACAGCGCAGCGC
ATGGCGCATGGCGAGGTGCATGGCCGCGAGGTCCTTTCGTCCTGGACGCAGCTTCTTGCCTATTGCCGCTCGGCCATGGC
CTTCGAGGCGCGCGAGCAGTTCCGCATCCTGTTCCTCGACAAGAAGAACGCATTGATCGCCGACGAGGTGCAGCAGACCG
GCACTGTCGACCACACGCCCGTCTATCCCAGAGAAGTGGTCAAGCGGGCGCTCGAACTGTCGGCCACCGCGATCATCCTG
GTGCACAACCATCCCACTCGCCTCTTTTTGATCACGCACAATCACGCATTAGCACATTGA

Upstream 100 bases:

>100_bases
CGACGAGCGGAGTTTCTTCGCCGAGGTGCCGGTTCGGCCAGCCGCGAAGGCGAGGCCTGCTCCAGCCGAAAAACCTGGAT
ATCTCGGCCACCGCGACCGT

Downstream 100 bases:

>100_bases
TATATATCGTTTTTTCGACTTGTCGCAGAGTCGGATATCGTGGCATATTGGGGTCGGTTTTAGGGGGATCGAAGGCCCGT
TTGGACCCAACCACAGACCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MRERFASAGADALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAEVLGAPVNLLQEVKGIGPAVALDLKVVAATAQR
MAHGEVHGREVLSSWTQLLAYCRSAMAFEAREQFRILFLDKKNALIADEVQQTGTVDHTPVYPREVVKRALELSATAIIL
VHNHPTRLFLITHNHALAH

Sequences:

>Translated_179_residues
MRERFASAGADALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAEVLGAPVNLLQEVKGIGPAVALDLKVVAATAQR
MAHGEVHGREVLSSWTQLLAYCRSAMAFEAREQFRILFLDKKNALIADEVQQTGTVDHTPVYPREVVKRALELSATAIIL
VHNHPTRLFLITHNHALAH
>Mature_179_residues
MRERFASAGADALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAEVLGAPVNLLQEVKGIGPAVALDLKVVAATAQR
MAHGEVHGREVLSSWTQLLAYCRSAMAFEAREQFRILFLDKKNALIADEVQQTGTVDHTPVYPREVVKRALELSATAIIL
VHNHPTRLFLITHNHALAH

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=165, Percent_Identity=33.9393939393939, Blast_Score=92, Evalue=1e-20,
Organism=Escherichia coli, GI2367100, Length=66, Percent_Identity=56.0606060606061, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788312, Length=61, Percent_Identity=54.0983606557377, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1788997, Length=83, Percent_Identity=44.578313253012, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 19731; Mature: 19731

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERFASAGADALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAEVLGAPVNLLQEV
CCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
KGIGPAVALDLKVVAATAQRMAHGEVHGREVLSSWTQLLAYCRSAMAFEAREQFRILFLD
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEE
KKNALIADEVQQTGTVDHTPVYPREVVKRALELSATAIILVHNHPTRLFLITHNHALAH
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCCC
>Mature Secondary Structure
MRERFASAGADALPDYELLELLLFRLIPRADTKPAAKALLARFGTLAEVLGAPVNLLQEV
CCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
KGIGPAVALDLKVVAATAQRMAHGEVHGREVLSSWTQLLAYCRSAMAFEAREQFRILFLD
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEE
KKNALIADEVQQTGTVDHTPVYPREVVKRALELSATAIILVHNHPTRLFLITHNHALAH
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA