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The map label for this gene is ykgD [C]

Identifier: 13470944

GI number: 13470944

Start: 613600

End: 614589

Strand: Reverse

Name: ykgD [C]

Synonym: mll0782

Alternate gene names: 13470944

Gene position: 614589-613600 (Counterclockwise)

Preceding gene: 13470947

Following gene: 13470943

Centisome position: 8.73

GC content: 61.72

Gene sequence:

>990_bases
ATGACCGACCATTCGTCCCGGCCGTCTCCGCCGCCGCATATTCCGATCGATGCGCTCAGCGAAATCCTACAAGACTTTCG
CTTGAGTGGCGTCAATTATGGCCGCTGCGAGCTCCGACATCCCTGGAGCATAGAATTTCCGCAACAATCGCTGCTTCGTT
TTCACTTTGTCGGTCAGGGTCCATGCTGGATCCATACCGAAGCGGAAGGCTGGCAGGAGTTGCGCGATGGCGATCTGGCG
CTGCTGCCGCAAGGCATCGCCCATCGGCTGGCCAGCGCGCCGGACGTTGCAGGCGGCTCGCTCGATGATTGCCGGGTGAC
CAAGTTGGGGAGCAACGTCTGCGAAGTCGTACGGGAAGGCACGGGCGCGACAAGCACCCTTTTCTGCGGCTCAATGGCCT
TGGGCGCCTGTGCGTTAAATCCATTGATCACGCTGATGCCGCCCATCATCAAGGGTTGCGACGTGGCCGGCAATGATCCG
GTCGTTGGTCCTCTGCTGACGGCCATGACCGTGGAGGCCGCGCAACCGCAGATGGGCAGCGCCACCATCTTGTCGCGTAT
GGCGGACTTGCTGACGGCCCGGCTCATTCGCTGCTGGGTCAATTGCACGGGAGCTTCGACCACCGGTTGGCTCGCTGCCA
TCCGCGACCCCCATATTGGCCGCGCTCTGGCAGCCATGCACAGAGACCCCGGCCATAATTGGACGCTCGAAAGCCTCGCC
AGCCTGGCAGGCCAATCGCGCTCGATTTTCGCCGAGCGCTTCAGCGCTGTATTGGGAGAGGGGGCTGCACGCTATCTCGC
CCGTTTGCGCATGCAGCTTGCCCGCGAGTTGTTGGGGCAAAACGGCTTGTCGGTGGCCGAGGTTGCTGCTCGCTTGGGCT
ATGATTCCGAGGCGTCCTTCGCTCGCGCCTTCAAGCGCATCACCAATGTCTCGCCTGGCGTTGTGCGTCGCACAATTCCC
GGACGAATGGACATGAATTTCGGATTGTGA

Upstream 100 bases:

>100_bases
GGGAGCCTGCCAGGACGGGGAGGATGCCGTCGAAGCGTTTCCCCTGGCGGGACCACGGTCTCCGCTTGCCTGCCGGACGA
TTGGTATCTATATCGACAGG

Downstream 100 bases:

>100_bases
GACACATATCATCCGAAGAAACCCGTCTATGAAGATCTCCAAACTTTGGAGATACTTCCGTGACAGACACGACATTACAG
CTTGAAGATGCGGCGATAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTDHSSRPSPPPHIPIDALSEILQDFRLSGVNYGRCELRHPWSIEFPQQSLLRFHFVGQGPCWIHTEAEGWQELRDGDLA
LLPQGIAHRLASAPDVAGGSLDDCRVTKLGSNVCEVVREGTGATSTLFCGSMALGACALNPLITLMPPIIKGCDVAGNDP
VVGPLLTAMTVEAAQPQMGSATILSRMADLLTARLIRCWVNCTGASTTGWLAAIRDPHIGRALAAMHRDPGHNWTLESLA
SLAGQSRSIFAERFSAVLGEGAARYLARLRMQLARELLGQNGLSVAEVAARLGYDSEASFARAFKRITNVSPGVVRRTIP
GRMDMNFGL

Sequences:

>Translated_329_residues
MTDHSSRPSPPPHIPIDALSEILQDFRLSGVNYGRCELRHPWSIEFPQQSLLRFHFVGQGPCWIHTEAEGWQELRDGDLA
LLPQGIAHRLASAPDVAGGSLDDCRVTKLGSNVCEVVREGTGATSTLFCGSMALGACALNPLITLMPPIIKGCDVAGNDP
VVGPLLTAMTVEAAQPQMGSATILSRMADLLTARLIRCWVNCTGASTTGWLAAIRDPHIGRALAAMHRDPGHNWTLESLA
SLAGQSRSIFAERFSAVLGEGAARYLARLRMQLARELLGQNGLSVAEVAARLGYDSEASFARAFKRITNVSPGVVRRTIP
GRMDMNFGL
>Mature_328_residues
TDHSSRPSPPPHIPIDALSEILQDFRLSGVNYGRCELRHPWSIEFPQQSLLRFHFVGQGPCWIHTEAEGWQELRDGDLAL
LPQGIAHRLASAPDVAGGSLDDCRVTKLGSNVCEVVREGTGATSTLFCGSMALGACALNPLITLMPPIIKGCDVAGNDPV
VGPLLTAMTVEAAQPQMGSATILSRMADLLTARLIRCWVNCTGASTTGWLAAIRDPHIGRALAAMHRDPGHNWTLESLAS
LAGQSRSIFAERFSAVLGEGAARYLARLRMQLARELLGQNGLSVAEVAARLGYDSEASFARAFKRITNVSPGVVRRTIPG
RMDMNFGL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=311, Percent_Identity=26.3665594855305, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35388; Mature: 35257

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDHSSRPSPPPHIPIDALSEILQDFRLSGVNYGRCELRHPWSIEFPQQSLLRFHFVGQG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHEECCC
PCWIHTEAEGWQELRDGDLALLPQGIAHRLASAPDVAGGSLDDCRVTKLGSNVCEVVREG
CEEEECCHHHHHHHCCCCEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
TGATSTLFCGSMALGACALNPLITLMPPIIKGCDVAGNDPVVGPLLTAMTVEAAQPQMGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
ATILSRMADLLTARLIRCWVNCTGASTTGWLAAIRDPHIGRALAAMHRDPGHNWTLESLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHH
SLAGQSRSIFAERFSAVLGEGAARYLARLRMQLARELLGQNGLSVAEVAARLGYDSEASF
HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHH
ARAFKRITNVSPGVVRRTIPGRMDMNFGL
HHHHHHHHCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TDHSSRPSPPPHIPIDALSEILQDFRLSGVNYGRCELRHPWSIEFPQQSLLRFHFVGQG
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHEECCC
PCWIHTEAEGWQELRDGDLALLPQGIAHRLASAPDVAGGSLDDCRVTKLGSNVCEVVREG
CEEEECCHHHHHHHCCCCEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
TGATSTLFCGSMALGACALNPLITLMPPIIKGCDVAGNDPVVGPLLTAMTVEAAQPQMGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
ATILSRMADLLTARLIRCWVNCTGASTTGWLAAIRDPHIGRALAAMHRDPGHNWTLESLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHH
SLAGQSRSIFAERFSAVLGEGAARYLARLRMQLARELLGQNGLSVAEVAARLGYDSEASF
HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHH
ARAFKRITNVSPGVVRRTIPGRMDMNFGL
HHHHHHHHCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]