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The map label for this gene is intD [C]

Identifier: 13470699

GI number: 13470699

Start: 346455

End: 347654

Strand: Direct

Name: intD [C]

Synonym: mlr0475

Alternate gene names: 13470699

Gene position: 346455-347654 (Clockwise)

Preceding gene: 13470698

Following gene: 13470702

Centisome position: 4.92

GC content: 62.5

Gene sequence:

>1200_bases
ATGAAAGGCCATATCCGCGAGCGCAGCCCAGGCCATTGGGCAATCGTCCTCGATGTCGGCGAGGTCGACCCGAAGACCGG
CAAGAAGAAACGCAAGTGGCACAGCTTCACCGGAACGAAGCGTGAGGCTCAGAAAGAATGCTCTCGCCTCATTACCGTTC
TTGATCAAGGGCTCTATGTCGAGCCGACAAAGCAGACCGTCGCCGAGTTTCTTAACGAATGGCTTGCGTTCGTCAAGCCG
TCTGTCGCGCCAAAAACCCATGAGCGCTACACCGAGATTTGCCGGAAAGGCCTGTCGCCGCTCATCGGCAACGTGATCCT
GTCCAAGCTGAAAACCGATCGAATAGATGCAGCCTTCACCACGGCGTTGACGGCGCCACGCGTCGACCACCGCACGAAGA
AGGATCAGCGCGAGCCGCTTCCGCCACTGGCGCCTCGCACAGTCCACCACTACCGACGGGTGCTCGTGAAGGCCTTGGGC
CAGGCCGTGACCTGGGAACGGCTATCGCGCAATCCGGCCACTGCGACAACGCCGCCCAAGGTCGAGAGGCAGAAGATGCT
CGCCTACGACGTCGGCCAGACAGCGACGCTGCTTGAAACTCTTCGGCCGACGCGGATGTTTGTCCCGGTTCTGTTGGCCG
TGACCTGCGGCCTGCGGCGGGGCGAGATCCTTGCGCTTCGTTGGCGCCATCTGGAGCTTGGAGACAATCGTCGGCAGATG
TCGATTGAAGAGAGCGCCGAGCAGACCGCCGACGGCGTACGCTACAAAGAACCGAAGAGCGGCCGGGCCAGGACGGTGGC
GCTCTCTGCCAGCACTGTCGCCGAACTGAAGGCGCACCGCGCGCGGCAGGCCGAGGAGCAGTTGCGCCTCGGTATTCGTC
CGGACGCCGACAGCTTCGTTGTGGCTCAGGTCGACGGCCAGCCCTTACAGCCGCGGTCGTTGACCCATGAGTGGGTCCGC
GTCCTTGGCAAGACCTCCCTACCCCGCATCCGCTTCCATGACCTTCGGCACACCCACGCGACACAGATGCTTTCGGCCGG
CGTTCACCCGAAGATTGCCAGCGAGCGCCTGGGCCACTCCAACATCGGGATCACGCTGGACCTCTACTCGCATGTCATGC
CCGGAATGCAGGCCGACGCGGCAGAGCAAGTTGACGTGGCATTGCAGGCGGCTATAAGCAGCGAGCGAAAAGGCAAATAG

Upstream 100 bases:

>100_bases
AGAATGGCCGATCCCAGCAAAAACCAAACCGCCAGAAAAACCAAAACCTGCGCCAAACCGCGAACTCGATGACGAAATCC
CGTTCTGAGGACAAGAGTAT

Downstream 100 bases:

>100_bases
TTGCAAAGTGCGTAGCAAAGTGGTTTTTCGGCCCCGGCGCCGGCAAACAAAAGCGCAATGATTGCAACTAGTTGGAGGGA
TGGCCGAGCGGTTTAAGGCA

Product: bacteriophage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MKGHIRERSPGHWAIVLDVGEVDPKTGKKKRKWHSFTGTKREAQKECSRLITVLDQGLYVEPTKQTVAEFLNEWLAFVKP
SVAPKTHERYTEICRKGLSPLIGNVILSKLKTDRIDAAFTTALTAPRVDHRTKKDQREPLPPLAPRTVHHYRRVLVKALG
QAVTWERLSRNPATATTPPKVERQKMLAYDVGQTATLLETLRPTRMFVPVLLAVTCGLRRGEILALRWRHLELGDNRRQM
SIEESAEQTADGVRYKEPKSGRARTVALSASTVAELKAHRARQAEEQLRLGIRPDADSFVVAQVDGQPLQPRSLTHEWVR
VLGKTSLPRIRFHDLRHTHATQMLSAGVHPKIASERLGHSNIGITLDLYSHVMPGMQADAAEQVDVALQAAISSERKGK

Sequences:

>Translated_399_residues
MKGHIRERSPGHWAIVLDVGEVDPKTGKKKRKWHSFTGTKREAQKECSRLITVLDQGLYVEPTKQTVAEFLNEWLAFVKP
SVAPKTHERYTEICRKGLSPLIGNVILSKLKTDRIDAAFTTALTAPRVDHRTKKDQREPLPPLAPRTVHHYRRVLVKALG
QAVTWERLSRNPATATTPPKVERQKMLAYDVGQTATLLETLRPTRMFVPVLLAVTCGLRRGEILALRWRHLELGDNRRQM
SIEESAEQTADGVRYKEPKSGRARTVALSASTVAELKAHRARQAEEQLRLGIRPDADSFVVAQVDGQPLQPRSLTHEWVR
VLGKTSLPRIRFHDLRHTHATQMLSAGVHPKIASERLGHSNIGITLDLYSHVMPGMQADAAEQVDVALQAAISSERKGK
>Mature_399_residues
MKGHIRERSPGHWAIVLDVGEVDPKTGKKKRKWHSFTGTKREAQKECSRLITVLDQGLYVEPTKQTVAEFLNEWLAFVKP
SVAPKTHERYTEICRKGLSPLIGNVILSKLKTDRIDAAFTTALTAPRVDHRTKKDQREPLPPLAPRTVHHYRRVLVKALG
QAVTWERLSRNPATATTPPKVERQKMLAYDVGQTATLLETLRPTRMFVPVLLAVTCGLRRGEILALRWRHLELGDNRRQM
SIEESAEQTADGVRYKEPKSGRARTVALSASTVAELKAHRARQAEEQLRLGIRPDADSFVVAQVDGQPLQPRSLTHEWVR
VLGKTSLPRIRFHDLRHTHATQMLSAGVHPKIASERLGHSNIGITLDLYSHVMPGMQADAAEQVDVALQAAISSERKGK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44801; Mature: 44801

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGHIRERSPGHWAIVLDVGEVDPKTGKKKRKWHSFTGTKREAQKECSRLITVLDQGLYV
CCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEE
EPTKQTVAEFLNEWLAFVKPSVAPKTHERYTEICRKGLSPLIGNVILSKLKTDRIDAAFT
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALTAPRVDHRTKKDQREPLPPLAPRTVHHYRRVLVKALGQAVTWERLSRNPATATTPPK
HHHCCCCCCHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
VERQKMLAYDVGQTATLLETLRPTRMFVPVLLAVTCGLRRGEILALRWRHLELGDNRRQM
HHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHC
SIEESAEQTADGVRYKEPKSGRARTVALSASTVAELKAHRARQAEEQLRLGIRPDADSFV
CHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
VAQVDGQPLQPRSLTHEWVRVLGKTSLPRIRFHDLRHTHATQMLSAGVHPKIASERLGHS
EEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
NIGITLDLYSHVMPGMQADAAEQVDVALQAAISSERKGK
CCCEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKGHIRERSPGHWAIVLDVGEVDPKTGKKKRKWHSFTGTKREAQKECSRLITVLDQGLYV
CCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEE
EPTKQTVAEFLNEWLAFVKPSVAPKTHERYTEICRKGLSPLIGNVILSKLKTDRIDAAFT
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALTAPRVDHRTKKDQREPLPPLAPRTVHHYRRVLVKALGQAVTWERLSRNPATATTPPK
HHHCCCCCCHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
VERQKMLAYDVGQTATLLETLRPTRMFVPVLLAVTCGLRRGEILALRWRHLELGDNRRQM
HHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHC
SIEESAEQTADGVRYKEPKSGRARTVALSASTVAELKAHRARQAEEQLRLGIRPDADSFV
CHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
VAQVDGQPLQPRSLTHEWVRVLGKTSLPRIRFHDLRHTHATQMLSAGVHPKIASERLGHS
EEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
NIGITLDLYSHVMPGMQADAAEQVDVALQAAISSERKGK
CCCEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]