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The map label for this gene is lptC [H]

Identifier: 15602038

GI number: 15602038

Start: 197871

End: 198449

Strand: Reverse

Name: lptC [H]

Synonym: PM0173

Alternate gene names: 15602038

Gene position: 198449-197871 (Counterclockwise)

Preceding gene: 15602046

Following gene: 15602037

Centisome position: 8.79

GC content: 36.96

Gene sequence:

>579_bases
ATGAATATTCGTTGGAATATAATTTTAGCAGGGCTTGCATTGGCTTTACTGGCTTGGTTTTATTCACTTAATCAAGGTGA
ACCGAGTCTAAATACCTTAATCAAAAAGCCTGATAGTCCCGAATATGTCGGACAAAAAATGAAAACCACGGTATTCTCAC
CAACAGGGAAAAAGCACTATGTTGCGATGTCGGATTCCGTTGAACATTTTGCCCTTTCAGGTCAAACGCACTTTCAAAAG
CCAGAAGTGTATTTATTTGAATTAGAAACAGAAAATCAACTTTCCAATAAAGAAAATTGGAAAGCCAGTGCGAACAAAGC
CATATTAACGAAAGAAAATATGCTGTATTTAGAAGGGAATGTTGTTGTGGAAAGCCTGTTAAGCCCTTCTCGTTTACAGC
GCGTTGAAACAGAAAGTGCGGTCATCAATTTATCTACGCAAGATATTAGCTCGGAACACGCCGTGAAAATTTATGGTCAA
CATTTTCATTCTACGGGTTTAAAACTCACCGGTAACTTACAACAACAAATCGCGACTTTAAAAGAGCAGGTAAATACATA
CTATGAAATCAATAAATAA

Upstream 100 bases:

>100_bases
GAAAAATTTTCTGAAATCCTACCGCACTTTTATTGGTTTTATTAAAATTATGCTATGATTGCCATTTAATAACTCACTTT
AATGACTTGAAATAGGTTTT

Downstream 100 bases:

>100_bases
CATTGTCATTTTCACGACATTATTCGCCACCGCATTACCTGCTTTCGCTTTGAAAAGCGATACAAAGCAACCGATTAATG
TGGTTTCCGATAACCAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNIRWNIILAGLALALLAWFYSLNQGEPSLNTLIKKPDSPEYVGQKMKTTVFSPTGKKHYVAMSDSVEHFALSGQTHFQK
PEVYLFELETENQLSNKENWKASANKAILTKENMLYLEGNVVVESLLSPSRLQRVETESAVINLSTQDISSEHAVKIYGQ
HFHSTGLKLTGNLQQQIATLKEQVNTYYEINK

Sequences:

>Translated_192_residues
MNIRWNIILAGLALALLAWFYSLNQGEPSLNTLIKKPDSPEYVGQKMKTTVFSPTGKKHYVAMSDSVEHFALSGQTHFQK
PEVYLFELETENQLSNKENWKASANKAILTKENMLYLEGNVVVESLLSPSRLQRVETESAVINLSTQDISSEHAVKIYGQ
HFHSTGLKLTGNLQQQIATLKEQVNTYYEINK
>Mature_192_residues
MNIRWNIILAGLALALLAWFYSLNQGEPSLNTLIKKPDSPEYVGQKMKTTVFSPTGKKHYVAMSDSVEHFALSGQTHFQK
PEVYLFELETENQLSNKENWKASANKAILTKENMLYLEGNVVVESLLSPSRLQRVETESAVINLSTQDISSEHAVKIYGQ
HFHSTGLKLTGNLQQQIATLKEQVNTYYEINK

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=187, Percent_Identity=34.7593582887701, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21718; Mature: 21718

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRWNIILAGLALALLAWFYSLNQGEPSLNTLIKKPDSPEYVGQKMKTTVFSPTGKKHY
CCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHEEECCCCCEEE
VAMSDSVEHFALSGQTHFQKPEVYLFELETENQLSNKENWKASANKAILTKENMLYLEGN
EEECCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEECH
VVVESLLSPSRLQRVETESAVINLSTQDISSEHAVKIYGQHFHSTGLKLTGNLQQQIATL
HHHHHHCCHHHHHHHCCCCEEEEEEHHCCCCCCEEEEEECHHCCCCCEEECCHHHHHHHH
KEQVNTYYEINK
HHHHHHEEEECC
>Mature Secondary Structure
MNIRWNIILAGLALALLAWFYSLNQGEPSLNTLIKKPDSPEYVGQKMKTTVFSPTGKKHY
CCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHEEECCCCCEEE
VAMSDSVEHFALSGQTHFQKPEVYLFELETENQLSNKENWKASANKAILTKENMLYLEGN
EEECCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEECH
VVVESLLSPSRLQRVETESAVINLSTQDISSEHAVKIYGQHFHSTGLKLTGNLQQQIATL
HHHHHHCCHHHHHHHCCCCEEEEEEHHCCCCCCEEEEEECHHCCCCCEEECCHHHHHHHH
KEQVNTYYEINK
HHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]