Definition | Pasteurella multocida subsp. multocida str. Pm70, complete genome. |
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Accession | NC_002663 |
Length | 2,257,487 |
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The map label for this gene is rnb
Identifier: 15602046
GI number: 15602046
Start: 203457
End: 205433
Strand: Reverse
Name: rnb
Synonym: PM0181
Alternate gene names: 15602046
Gene position: 205433-203457 (Counterclockwise)
Preceding gene: 15602047
Following gene: 15602038
Centisome position: 9.1
GC content: 41.22
Gene sequence:
>1977_bases ATGTTCCAAAATAATCCCCTCCTTTCACAATTAAAACAACAAATCCGAGACAGCAAACAACAAGTCGAAGGTATCGTAAA AGGTTCAGATAAAGCCTTTGGTTTTCTTGAGTGTGATAAAAAAAGTTACTTTATTCCCCCTGCTGCAATGAAGAAAGTCA TGCATGGTGACAAAATCAAAGCCCTGATTGAAGTCGTTGGTGAAAAAGAACAAGCCGAACCCGATGCATTAATTGAGCCA ATGCTCACACGCTTTATCGCGCGTGTGCGTTTCAATAAAGATAAAAAATTACAAGTGCTCGTCGATCATCCACAAATCAA TCAAGCCATTGGTGCTGCCCAAGATAAATCAATAACAGAAACGTTACAAGAAGGGGATTGGGTCGTTGCTACTTTAAAAA CACACCCATTACGTGATGACAGATTCTTTTTCGCTCAAATTCAGCAATTTATTTGCCGTGCAGAAGATGAACTCGCGCCT TGGTGGGTCACGCTAGCACGTCATGGACAATCGCGTTATCCTGTGCAAGGTTGTGCAGATTATCCAATGATAGATCAACA TACACGTGAAGATTTGACCGCATTGCATTTTATCACCATTGATGCGGAAACGACGTTGGACATGGATGATGCGCTTTACC TTGAGCCTATTCATCAAGCGGAGGAACAGATTGGTTGGCGTTTAGTGGTCGCCGTTGCCGATCCAACTGCTTATATCCCG CTTGATTCACAAATTGAACAAGAAGCCAGACAACGGTGTTTTACCAATTATCTACCGGGCTTCAACATTCCAATGTTACC ACCGGAATTGTCTGATGAACGTTGTTCTTTAATGCAAGACGAAATTCGTCCGGCGTTGGTCTGCTATATCGAAACCGATT TAACCGGTAATATCACTGAAAAACCGCGCTTTGTTTCCGCTTATGTACAATCCAAAGCGAAATTAGCCTATGATCACGTC TCTGATTATTTAGAAAATTGTCTTGATGCATGGCAGCCTGAAAATCCACAAATCGCACAACAAATCCAATGGCTTCATCA ATTTACTCAAGCACGCATCGAGTGGCGTAAACAACATGCTTTGTTATTTAAAGAAAAGCCAGACTATTCGTTTATCTTAG CGGAGAATGGCAGCGTACAAGCCATTCAAGCACAATATCGTCGCATTGCGAATCAAATGGTAGAGGAATGTATGATTCTC GCCAACATTTGTGCTGCACACTATCTCGATGAACATGCTAAGTGCGGTATTTTTAATACGCATTCTGGGTTTGATAAAAA ATACCTAGAGAGTGCACATCAATTTTTATTAAATCAGTTAAGTGATGAAACAAACCAAGCCGTCTTAGCAACACGTTATT CTGTAGCGAATTTAACAACATTAGCGGGCTATTGCCAAATGCGCCATGATATTGAGTTATTAAATAGTGACTATCTCGAA TTGCGTTTACGCCGTTTCTTAACATTTGCTGAATTTAAATCTGAAATCGCACCGCACTTTGGTTTAGGCTTATCGGGTTA TGCGACCTGGACATCCCCGATTCGTAAATATTCCGATATGGTCAATCATCGCTTAATTAAAGCTGTGTTAACCCAACAAA CTTGTGAGAAACCGCAAGATGACCTGTTCGTACGTTTGCAAGAAGCGCGTCGTCAAAACCGTTTAGTAGAGCGTGATATT GCAGATTGGCTTTATTGTCGTTATTTAGCAACACAAGTGGAACAAAAACCAACATTCCAAGCGGAAATTCAAGATGTGAT GCGAGGGGGATTACGTGTGCAACTGCTTGCTAATGGTGCGCCGATGTTTATCCCTGCCTCCTTAATTCATGACAATAAGG AAGCGATTCAAGTCAATACGGATACGCTTACTCTGTCTATTCAAGGTGAAGTGAAATATAAATTAGGAGATATCATTCAG GTGCAACTCTTGGACGTGAAAGAAGAAACGCGTAGTATTGTCGGCACTCTTTGTTAA
Upstream 100 bases:
>100_bases TGCCGGTTTCAGTATCGTAGCTATGGGTGAACTCGAATAAGTTTTACATGTTATATAAGAGCGGACATCAGTCCGCTTTC ATTTTTTATGGATAGCCTCA
Downstream 100 bases:
>100_bases ATGTAAAAAAGGGAAATCACTGATTTCCCTTTCTTTTTCTTATTAAACCATGGCTTAACTTTCTTCACTTTGTGCTGAAA AACGTTCGATACGTGCGCCT
Product: exoribonuclease II
Products: NA
Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIKALIEVVGEKEQAEPDALIEP MLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITETLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAP WWVTLARHGQSRYPVQGCADYPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITEKPRFVSAYVQSKAKLAYDHV SDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHALLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMIL ANICAAHYLDEHAKCGIFNTHSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQDDLFVRLQEARRQNRLVERDI ADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGAPMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQ VQLLDVKEETRSIVGTLC
Sequences:
>Translated_658_residues MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIKALIEVVGEKEQAEPDALIEP MLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITETLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAP WWVTLARHGQSRYPVQGCADYPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITEKPRFVSAYVQSKAKLAYDHV SDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHALLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMIL ANICAAHYLDEHAKCGIFNTHSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQDDLFVRLQEARRQNRLVERDI ADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGAPMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQ VQLLDVKEETRSIVGTLC >Mature_658_residues MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIKALIEVVGEKEQAEPDALIEP MLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITETLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAP WWVTLARHGQSRYPVQGCADYPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITEKPRFVSAYVQSKAKLAYDHV SDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHALLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMIL ANICAAHYLDEHAKCGIFNTHSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQDDLFVRLQEARRQNRLVERDI ADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGAPMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQ VQLLDVKEETRSIVGTLC
Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
COG id: COG4776
COG function: function code K; Exoribonuclease II
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain
Homologues:
Organism=Homo sapiens, GI190014625, Length=366, Percent_Identity=27.3224043715847, Blast_Score=98, Evalue=3e-20, Organism=Homo sapiens, GI190014623, Length=366, Percent_Identity=27.3224043715847, Blast_Score=98, Evalue=3e-20, Organism=Homo sapiens, GI134288890, Length=444, Percent_Identity=24.3243243243243, Blast_Score=96, Evalue=8e-20, Organism=Escherichia coli, GI1787542, Length=656, Percent_Identity=47.8658536585366, Blast_Score=635, Evalue=0.0, Organism=Escherichia coli, GI87082383, Length=668, Percent_Identity=26.1976047904192, Blast_Score=174, Evalue=1e-44, Organism=Caenorhabditis elegans, GI17553506, Length=361, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=2e-21, Organism=Caenorhabditis elegans, GI212645896, Length=473, Percent_Identity=23.6786469344609, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24649634, Length=360, Percent_Identity=27.7777777777778, Blast_Score=112, Evalue=6e-25, Organism=Drosophila melanogaster, GI19922976, Length=442, Percent_Identity=25.7918552036199, Blast_Score=109, Evalue=7e-24, Organism=Drosophila melanogaster, GI24654597, Length=442, Percent_Identity=25.7918552036199, Blast_Score=109, Evalue=7e-24, Organism=Drosophila melanogaster, GI24654592, Length=442, Percent_Identity=25.7918552036199, Blast_Score=108, Evalue=9e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RNB_PASMU (Q9CP74)
Other databases:
- EMBL: AE004439 - RefSeq: NP_245118.1 - ProteinModelPortal: Q9CP74 - SMR: Q9CP74 - PRIDE: Q9CP74 - GeneID: 1243528 - GenomeReviews: AE004439_GR - KEGG: pmu:PM0181 - NMPDR: fig|272843.1.peg.181 - HOGENOM: HBG401488 - OMA: MDDALYI - ProtClustDB: PRK05054 - BioCyc: PMUL272843:PM0181-MONOMER - BRENDA: 3.1.13.1 - GO: GO:0005737 - HAMAP: MF_01036 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011804 - Gene3D: G3DSA:2.40.50.140 - PANTHER: PTHR23355:SF6 - SMART: SM00357 - SMART: SM00955 - SMART: SM00316 - TIGRFAMs: TIGR00358 - TIGRFAMs: TIGR02062
Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1; SSF50249 Nucleic_acid_OB
EC number: =3.1.13.1
Molecular weight: Translated: 75589; Mature: 75589
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: PS01175 RIBONUCLEASE_II; PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIK CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCHHHHHHHHCCHHHH ALIEVVGEKEQAEPDALIEPMLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITE HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCHHHHH TLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAPWWVTLARHGQSRYPVQGCAD HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC YPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP CCCCCHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEECC LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITE CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCC KPRFVSAYVQSKAKLAYDHVSDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMILANICAAHYLDEHAKCGIFNT HEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC HSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQD HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH DLFVRLQEARRQNRLVERDIADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCC PMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQVQLLDVKEETRSIVGTLC CCEEEHHHHCCCCCEEEEECCEEEEEEECEEEEECCCEEEEEEECHHHHHHHHHHCCC >Mature Secondary Structure MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIK CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCHHHHHHHHCCHHHH ALIEVVGEKEQAEPDALIEPMLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITE HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCHHHHH TLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAPWWVTLARHGQSRYPVQGCAD HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC YPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP CCCCCHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEECC LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITE CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCC KPRFVSAYVQSKAKLAYDHVSDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMILANICAAHYLDEHAKCGIFNT HEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC HSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQD HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH DLFVRLQEARRQNRLVERDIADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCC PMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQVQLLDVKEETRSIVGTLC CCEEEHHHHCCCCCEEEEECCEEEEEEECEEEEECCCEEEEEEECHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11248100