Definition Pasteurella multocida subsp. multocida str. Pm70, complete genome.
Accession NC_002663
Length 2,257,487

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The map label for this gene is rnb

Identifier: 15602046

GI number: 15602046

Start: 203457

End: 205433

Strand: Reverse

Name: rnb

Synonym: PM0181

Alternate gene names: 15602046

Gene position: 205433-203457 (Counterclockwise)

Preceding gene: 15602047

Following gene: 15602038

Centisome position: 9.1

GC content: 41.22

Gene sequence:

>1977_bases
ATGTTCCAAAATAATCCCCTCCTTTCACAATTAAAACAACAAATCCGAGACAGCAAACAACAAGTCGAAGGTATCGTAAA
AGGTTCAGATAAAGCCTTTGGTTTTCTTGAGTGTGATAAAAAAAGTTACTTTATTCCCCCTGCTGCAATGAAGAAAGTCA
TGCATGGTGACAAAATCAAAGCCCTGATTGAAGTCGTTGGTGAAAAAGAACAAGCCGAACCCGATGCATTAATTGAGCCA
ATGCTCACACGCTTTATCGCGCGTGTGCGTTTCAATAAAGATAAAAAATTACAAGTGCTCGTCGATCATCCACAAATCAA
TCAAGCCATTGGTGCTGCCCAAGATAAATCAATAACAGAAACGTTACAAGAAGGGGATTGGGTCGTTGCTACTTTAAAAA
CACACCCATTACGTGATGACAGATTCTTTTTCGCTCAAATTCAGCAATTTATTTGCCGTGCAGAAGATGAACTCGCGCCT
TGGTGGGTCACGCTAGCACGTCATGGACAATCGCGTTATCCTGTGCAAGGTTGTGCAGATTATCCAATGATAGATCAACA
TACACGTGAAGATTTGACCGCATTGCATTTTATCACCATTGATGCGGAAACGACGTTGGACATGGATGATGCGCTTTACC
TTGAGCCTATTCATCAAGCGGAGGAACAGATTGGTTGGCGTTTAGTGGTCGCCGTTGCCGATCCAACTGCTTATATCCCG
CTTGATTCACAAATTGAACAAGAAGCCAGACAACGGTGTTTTACCAATTATCTACCGGGCTTCAACATTCCAATGTTACC
ACCGGAATTGTCTGATGAACGTTGTTCTTTAATGCAAGACGAAATTCGTCCGGCGTTGGTCTGCTATATCGAAACCGATT
TAACCGGTAATATCACTGAAAAACCGCGCTTTGTTTCCGCTTATGTACAATCCAAAGCGAAATTAGCCTATGATCACGTC
TCTGATTATTTAGAAAATTGTCTTGATGCATGGCAGCCTGAAAATCCACAAATCGCACAACAAATCCAATGGCTTCATCA
ATTTACTCAAGCACGCATCGAGTGGCGTAAACAACATGCTTTGTTATTTAAAGAAAAGCCAGACTATTCGTTTATCTTAG
CGGAGAATGGCAGCGTACAAGCCATTCAAGCACAATATCGTCGCATTGCGAATCAAATGGTAGAGGAATGTATGATTCTC
GCCAACATTTGTGCTGCACACTATCTCGATGAACATGCTAAGTGCGGTATTTTTAATACGCATTCTGGGTTTGATAAAAA
ATACCTAGAGAGTGCACATCAATTTTTATTAAATCAGTTAAGTGATGAAACAAACCAAGCCGTCTTAGCAACACGTTATT
CTGTAGCGAATTTAACAACATTAGCGGGCTATTGCCAAATGCGCCATGATATTGAGTTATTAAATAGTGACTATCTCGAA
TTGCGTTTACGCCGTTTCTTAACATTTGCTGAATTTAAATCTGAAATCGCACCGCACTTTGGTTTAGGCTTATCGGGTTA
TGCGACCTGGACATCCCCGATTCGTAAATATTCCGATATGGTCAATCATCGCTTAATTAAAGCTGTGTTAACCCAACAAA
CTTGTGAGAAACCGCAAGATGACCTGTTCGTACGTTTGCAAGAAGCGCGTCGTCAAAACCGTTTAGTAGAGCGTGATATT
GCAGATTGGCTTTATTGTCGTTATTTAGCAACACAAGTGGAACAAAAACCAACATTCCAAGCGGAAATTCAAGATGTGAT
GCGAGGGGGATTACGTGTGCAACTGCTTGCTAATGGTGCGCCGATGTTTATCCCTGCCTCCTTAATTCATGACAATAAGG
AAGCGATTCAAGTCAATACGGATACGCTTACTCTGTCTATTCAAGGTGAAGTGAAATATAAATTAGGAGATATCATTCAG
GTGCAACTCTTGGACGTGAAAGAAGAAACGCGTAGTATTGTCGGCACTCTTTGTTAA

Upstream 100 bases:

>100_bases
TGCCGGTTTCAGTATCGTAGCTATGGGTGAACTCGAATAAGTTTTACATGTTATATAAGAGCGGACATCAGTCCGCTTTC
ATTTTTTATGGATAGCCTCA

Downstream 100 bases:

>100_bases
ATGTAAAAAAGGGAAATCACTGATTTCCCTTTCTTTTTCTTATTAAACCATGGCTTAACTTTCTTCACTTTGTGCTGAAA
AACGTTCGATACGTGCGCCT

Product: exoribonuclease II

Products: NA

Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIKALIEVVGEKEQAEPDALIEP
MLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITETLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAP
WWVTLARHGQSRYPVQGCADYPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP
LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITEKPRFVSAYVQSKAKLAYDHV
SDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHALLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMIL
ANICAAHYLDEHAKCGIFNTHSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE
LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQDDLFVRLQEARRQNRLVERDI
ADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGAPMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQ
VQLLDVKEETRSIVGTLC

Sequences:

>Translated_658_residues
MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIKALIEVVGEKEQAEPDALIEP
MLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITETLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAP
WWVTLARHGQSRYPVQGCADYPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP
LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITEKPRFVSAYVQSKAKLAYDHV
SDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHALLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMIL
ANICAAHYLDEHAKCGIFNTHSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE
LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQDDLFVRLQEARRQNRLVERDI
ADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGAPMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQ
VQLLDVKEETRSIVGTLC
>Mature_658_residues
MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIKALIEVVGEKEQAEPDALIEP
MLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITETLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAP
WWVTLARHGQSRYPVQGCADYPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP
LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITEKPRFVSAYVQSKAKLAYDHV
SDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHALLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMIL
ANICAAHYLDEHAKCGIFNTHSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE
LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQDDLFVRLQEARRQNRLVERDI
ADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGAPMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQ
VQLLDVKEETRSIVGTLC

Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction

COG id: COG4776

COG function: function code K; Exoribonuclease II

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain

Homologues:

Organism=Homo sapiens, GI190014625, Length=366, Percent_Identity=27.3224043715847, Blast_Score=98, Evalue=3e-20,
Organism=Homo sapiens, GI190014623, Length=366, Percent_Identity=27.3224043715847, Blast_Score=98, Evalue=3e-20,
Organism=Homo sapiens, GI134288890, Length=444, Percent_Identity=24.3243243243243, Blast_Score=96, Evalue=8e-20,
Organism=Escherichia coli, GI1787542, Length=656, Percent_Identity=47.8658536585366, Blast_Score=635, Evalue=0.0,
Organism=Escherichia coli, GI87082383, Length=668, Percent_Identity=26.1976047904192, Blast_Score=174, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI17553506, Length=361, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI212645896, Length=473, Percent_Identity=23.6786469344609, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24649634, Length=360, Percent_Identity=27.7777777777778, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI19922976, Length=442, Percent_Identity=25.7918552036199, Blast_Score=109, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24654597, Length=442, Percent_Identity=25.7918552036199, Blast_Score=109, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24654592, Length=442, Percent_Identity=25.7918552036199, Blast_Score=108, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNB_PASMU (Q9CP74)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245118.1
- ProteinModelPortal:   Q9CP74
- SMR:   Q9CP74
- PRIDE:   Q9CP74
- GeneID:   1243528
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0181
- NMPDR:   fig|272843.1.peg.181
- HOGENOM:   HBG401488
- OMA:   MDDALYI
- ProtClustDB:   PRK05054
- BioCyc:   PMUL272843:PM0181-MONOMER
- BRENDA:   3.1.13.1
- GO:   GO:0005737
- HAMAP:   MF_01036
- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013223
- InterPro:   IPR001900
- InterPro:   IPR022966
- InterPro:   IPR004476
- InterPro:   IPR011804
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR23355:SF6
- SMART:   SM00357
- SMART:   SM00955
- SMART:   SM00316
- TIGRFAMs:   TIGR00358
- TIGRFAMs:   TIGR02062

Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1; SSF50249 Nucleic_acid_OB

EC number: =3.1.13.1

Molecular weight: Translated: 75589; Mature: 75589

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS01175 RIBONUCLEASE_II; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCHHHHHHHHCCHHHH
ALIEVVGEKEQAEPDALIEPMLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITE
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCHHHHH
TLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAPWWVTLARHGQSRYPVQGCAD
HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC
YPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP
CCCCCHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEECC
LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCC
KPRFVSAYVQSKAKLAYDHVSDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMILANICAAHYLDEHAKCGIFNT
HEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
HSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQD
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DLFVRLQEARRQNRLVERDIADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCC
PMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQVQLLDVKEETRSIVGTLC
CCEEEHHHHCCCCCEEEEECCEEEEEEECEEEEECCCEEEEEEECHHHHHHHHHHCCC
>Mature Secondary Structure
MFQNNPLLSQLKQQIRDSKQQVEGIVKGSDKAFGFLECDKKSYFIPPAAMKKVMHGDKIK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCHHHHHHHHCCHHHH
ALIEVVGEKEQAEPDALIEPMLTRFIARVRFNKDKKLQVLVDHPQINQAIGAAQDKSITE
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCHHHHH
TLQEGDWVVATLKTHPLRDDRFFFAQIQQFICRAEDELAPWWVTLARHGQSRYPVQGCAD
HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCC
YPMIDQHTREDLTALHFITIDAETTLDMDDALYLEPIHQAEEQIGWRLVVAVADPTAYIP
CCCCCHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEECC
LDSQIEQEARQRCFTNYLPGFNIPMLPPELSDERCSLMQDEIRPALVCYIETDLTGNITE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCC
KPRFVSAYVQSKAKLAYDHVSDYLENCLDAWQPENPQIAQQIQWLHQFTQARIEWRKQHA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLFKEKPDYSFILAENGSVQAIQAQYRRIANQMVEECMILANICAAHYLDEHAKCGIFNT
HEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
HSGFDKKYLESAHQFLLNQLSDETNQAVLATRYSVANLTTLAGYCQMRHDIELLNSDYLE
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LRLRRFLTFAEFKSEIAPHFGLGLSGYATWTSPIRKYSDMVNHRLIKAVLTQQTCEKPQD
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DLFVRLQEARRQNRLVERDIADWLYCRYLATQVEQKPTFQAEIQDVMRGGLRVQLLANGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCC
PMFIPASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQVQLLDVKEETRSIVGTLC
CCEEEHHHHCCCCCEEEEECCEEEEEEECEEEEECCCEEEEEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11248100