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The map label for this gene is ytgF

Identifier: 15673882

GI number: 15673882

Start: 1967163

End: 1968758

Strand: Reverse

Name: ytgF

Synonym: L150593

Alternate gene names: 15673882

Gene position: 1968758-1967163 (Counterclockwise)

Preceding gene: 15673883

Following gene: 15673881

Centisome position: 83.22

GC content: 39.6

Gene sequence:

>1596_bases
ATGGACATTATTTCTATCGTTCTCTTGGTCTTATTGGTTGTATTAGTTGTCGCATTTATTTTTTACGCTCAAAATATAAA
GAAAAATAAGCAGGATGCTGAATCTCTTTTTAATGAAGCTGAAAATAAAGCAAATGAGGTGATGGCGAATGCTAAACGTG
AGGCGGAGTCTTTGAAAATGGAGGCTGAAGCCTTCAAAAAAGAAGCCCGTTACACCCTTCGTGAAGAAGAACAAAAGCAG
CGTCGTGAAATCGAAGATGAATTTAAGCAAGAACGTCAGGAGTTAAAGGAGACTGAAAAGCGCCTAAAACAACGTGAAGA
AATCTTAGACCGTAAGGATGATACCTTAACGAAAAAAGAAGAAAACTTAGATTCTAAAGAGGAGAACCTCGTTAGAAAAA
CTGATACGCTCAGTAAGCGAGAAGAACAATTAGCGCATATTGAAGAAAAGAAACGACTAGAATTGGAGCGTATTTCAAAT
TTGAGCACAGATGATGCTCGTGAAATTATTTTGAGTGAAACTCGAGATGGTTTGACAAAAGAAATGGCTCAAATTATTCG
TCAAAGCGAAGAAAAAGCTCAAGTTGAAGCAGATAAGCGAGCTAAAAATATTATCTCACTTGCTATTCAACGCGTTTCAT
CTGATTCTGTAGCTGAACAAACTGTTTCAGTTGTCAATTTACCAGACGACGGTATGAAAGGTCGGATTATCGGTCGTGAA
GGTCGTAATATTCGTACTTTTGAAGCTTTGACTGGGATTGATGTCATCATTGATGATACGCCAGAAGCAGTTGTACTTTC
AGGATTTGACCCAATTCGTCGTGAAATTGCTCGTATGACTCTTGAACAATTAGTTCAAGATGGTCGAATTCATCCAGCGC
GAATTGAAGAGTTGGTTGAGAAAAACCGCAAAGCACTTGATCATAAAATGCGTGAATATGGTGAACAAGCAGCCTTTGAA
GTTGGGGCGCATAACTTGCATCCTGACTTGATGAAGATTATGGGACGTTTGCATTTCCGTACTTCATATGGACAAAATGT
ACTTGATCACTCAGTCGAAGTTGCTCATATTGCTGGTAATTTGGCTGGCGAAATGGGAGAAAATGTGGCACTTGCTAAAC
GTGCAGGTTTCTTGCATGATATTGGTAAAGCACTTGACCATGAAGTTGAGGGAAGCCACGTTGAAATTGGAACAGAACTT
GCGCGTAAGTACAAGGAAAATCCAATTGTCATCAATACAATTGCGAGTCACCACGGTGATACAGAACCTTTGAGTAACAT
TGCGGTACTTGTTGCAGCGGCTGATGCTTTGTCAGCAGCACGTCCTGGAGCTCGTCGTGAATCAATTGAAAATTACATCA
AACGTTTGAAAGACCTTGAAGCAATTTCAACAAGCTTTGAAGGTGTGGAAACAGCATTTGCCTTGCAAGCTGGACGCGAA
ATTCGTGTAATGGTTAAACCAGAAAAATTAACGGATGACCAAATTGTGATTTTGGCGCGTGATGTGAAAAATCGAATTGA
GGATGAAATGGATTATCCTGGTAATATCAAGATTACTGTTATCCGTGAAACTCGAGCGATTGACTATGCAAAATAA

Upstream 100 bases:

>100_bases
TGATATAATAAATGAGTGTTTTACTATGTAAAATACATTAATTTATAATCAAACTGTGAGTAGAATTTATTGGAATTACT
ACTGACTTTAGAGGAGACTA

Downstream 100 bases:

>100_bases
AAAACTGTCTTTTGACAGTTTTTTTGTGTCTTATTACAAAATTATATTTCTTTTTTATTACAAAAGCTAGTTTTAAGAGC
TAGCTTTTGATAGAATGAAT

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMANAKREAESLKMEAEAFKKEARYTLREEEQKQ
RREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKEENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISN
LSTDDAREIILSETRDGLTKEMAQIIRQSEEKAQVEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFE
VGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGNLAGEMGENVALAKRAGFLHDIGKALDHEVEGSHVEIGTEL
ARKYKENPIVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFEGVETAFALQAGRE
IRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKITVIRETRAIDYAK

Sequences:

>Translated_531_residues
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMANAKREAESLKMEAEAFKKEARYTLREEEQKQ
RREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKEENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISN
LSTDDAREIILSETRDGLTKEMAQIIRQSEEKAQVEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFE
VGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGNLAGEMGENVALAKRAGFLHDIGKALDHEVEGSHVEIGTEL
ARKYKENPIVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFEGVETAFALQAGRE
IRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKITVIRETRAIDYAK
>Mature_531_residues
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMANAKREAESLKMEAEAFKKEARYTLREEEQKQ
RREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKEENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISN
LSTDDAREIILSETRDGLTKEMAQIIRQSEEKAQVEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFE
VGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGNLAGEMGENVALAKRAGFLHDIGKALDHEVEGSHVEIGTEL
ARKYKENPIVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFEGVETAFALQAGRE
IRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKITVIRETRAIDYAK

Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CNPD_LACLA (Q9CEE2)

Other databases:

- EMBL:   AE005176
- PIR:   D86862
- RefSeq:   NP_268057.1
- ProteinModelPortal:   Q9CEE2
- GeneID:   1115565
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L150593
- NMPDR:   fig|272623.1.peg.1946
- HOGENOM:   HBG734610
- OMA:   HPGRIEE
- ProtClustDB:   PRK12704
- BioCyc:   LLAC272623:L150593-MONOMER
- HAMAP:   MF_00335
- InterPro:   IPR017705
- InterPro:   IPR022711
- InterPro:   IPR004087
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR003607
- InterPro:   IPR006675
- SMART:   SM00471
- SMART:   SM00322
- TIGRFAMs:   TIGR00277
- TIGRFAMs:   TIGR03319

Pfam domain/function: PF12072 DUF3552; PF00013 KH_1

EC number: =3.1.4.16

Molecular weight: Translated: 60318; Mature: 60318

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfc3cb54)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMANAKREAESLKM
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAEAFKKEARYTLREEEQKQRREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISNLSTDDAREIILSETRDGLTK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHH
EMAQIIRQSEEKAQVEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCEECCC
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVE
CCCEEHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGN
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHH
LAGEMGENVALAKRAGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGD
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEHHHCCCC
TEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFEGVETAFALQAGRE
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKITVIRETRAIDYAK
EEEEECCCCCCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCH
>Mature Secondary Structure
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMANAKREAESLKM
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAEAFKKEARYTLREEEQKQRREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISNLSTDDAREIILSETRDGLTK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHH
EMAQIIRQSEEKAQVEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCEECCC
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVE
CCCEEHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
KNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGN
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHH
LAGEMGENVALAKRAGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGD
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEHHHCCCC
TEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFEGVETAFALQAGRE
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKITVIRETRAIDYAK
EEEEECCCCCCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471