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The map label for this gene is ypdA

Identifier: 15673479

GI number: 15673479

Start: 1530005

End: 1530937

Strand: Reverse

Name: ypdA

Synonym: L129753

Alternate gene names: 15673479

Gene position: 1530937-1530005 (Counterclockwise)

Preceding gene: 15673480

Following gene: 15673478

Centisome position: 64.72

GC content: 35.91

Gene sequence:

>933_bases
ATGAAAAAATTTTTTCGGAATATTTGGCGCTATAAAGCACTGATAATTATGGCTCTGCCAGGTGCAATTTGGATGATATT
CTTCTTTTATATTCCAGTATTTGCAAATGTGGTGGCTTTTAAAGATTTTCATATTGATCCAGATGGATTTTTGGCCAGTT
TGACCAATAGTCCTTGGGTAGGATTTAAAAACTTTGAATTCCTCTTTTCTTCTGGTGCTGCTTTTGATATCACAAGAAAT
ACGGTTCTTTATAATGTTGGGTTTATTACACTGAATTTGATTATTTCTATTGCGTTTGCAATTATCATGAGTGAATTAAG
AAATAAAAAGTTGGTAAAAGTGTATCAAACGATGTCACTTCTTCCTTATTTCCTTTCATGGGTTGTTATTTCTTACTTTG
TTTATGCCTTCTTGGCACCAGGAAACAAAGGGATTTTCAACCAAATGATTATGCATAATGGTGGGATGCCAGTCAATTGG
TATCAAGAACCAAAATATTGGGTCTTCATCATCCTCTTCATTGGAGTTTGGAAGGGAATTGGTTATAATTCGATTATTTA
CTTTGCAACAGTAATGGGAATTAACCCAACCTACTATGAAGCAGCAATGGTTGATGGAGCAACAAAATGGCAACAGATTA
AAAATATTACCATTCCTCAAGTTGTTCCACTGATGACGATTTTGACAATCTTAGCCGTTGGAAATATTTTCCGTGCTGAC
TTTGGTCTTTTCTATAATGTTCCACGACAATCAGGTGCTTTGACACCAGTAACGCAGGTCCTTGATACCTATATCTATAA
TGGATTAGCTAACACTGGTGACTTAGGAATGGCGACGGCAGCAGCGCTTTATCAATCGGTAGTAGGATTCATTCTTCTAA
TGATTACAAACTTCTTTGCCCGCAGACTTGATAGTGATTCAGCATTATTCTAA

Upstream 100 bases:

>100_bases
CGAAATTACTTAATTTACTCGAAGATGAAATTGAAGCAGACTCACAAACACAAATTGCAGCTCACGAAATCCGGACTTTG
TTGATTAAGGAGAAAAATCA

Downstream 100 bases:

>100_bases
GAAAGGAGGAAGCTAGTAGGTCAAGCCTTTTATCAAACTTGAAAGCTAATAATATATGAAAAAGAAAAAAATAGCCTCAT
TATCTGTTCGAGGATTTAAT

Product: sugar ABC transporter substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKKFFRNIWRYKALIIMALPGAIWMIFFFYIPVFANVVAFKDFHIDPDGFLASLTNSPWVGFKNFEFLFSSGAAFDITRN
TVLYNVGFITLNLIISIAFAIIMSELRNKKLVKVYQTMSLLPYFLSWVVISYFVYAFLAPGNKGIFNQMIMHNGGMPVNW
YQEPKYWVFIILFIGVWKGIGYNSIIYFATVMGINPTYYEAAMVDGATKWQQIKNITIPQVVPLMTILTILAVGNIFRAD
FGLFYNVPRQSGALTPVTQVLDTYIYNGLANTGDLGMATAAALYQSVVGFILLMITNFFARRLDSDSALF

Sequences:

>Translated_310_residues
MKKFFRNIWRYKALIIMALPGAIWMIFFFYIPVFANVVAFKDFHIDPDGFLASLTNSPWVGFKNFEFLFSSGAAFDITRN
TVLYNVGFITLNLIISIAFAIIMSELRNKKLVKVYQTMSLLPYFLSWVVISYFVYAFLAPGNKGIFNQMIMHNGGMPVNW
YQEPKYWVFIILFIGVWKGIGYNSIIYFATVMGINPTYYEAAMVDGATKWQQIKNITIPQVVPLMTILTILAVGNIFRAD
FGLFYNVPRQSGALTPVTQVLDTYIYNGLANTGDLGMATAAALYQSVVGFILLMITNFFARRLDSDSALF
>Mature_310_residues
MKKFFRNIWRYKALIIMALPGAIWMIFFFYIPVFANVVAFKDFHIDPDGFLASLTNSPWVGFKNFEFLFSSGAAFDITRN
TVLYNVGFITLNLIISIAFAIIMSELRNKKLVKVYQTMSLLPYFLSWVVISYFVYAFLAPGNKGIFNQMIMHNGGMPVNW
YQEPKYWVFIILFIGVWKGIGYNSIIYFATVMGINPTYYEAAMVDGATKWQQIKNITIPQVVPLMTILTILAVGNIFRAD
FGLFYNVPRQSGALTPVTQVLDTYIYNGLANTGDLGMATAAALYQSVVGFILLMITNFFARRLDSDSALF

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane. May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: COG4209

COG function: function code G; ABC-type polysaccharide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=291, Percent_Identity=26.1168384879725, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787570, Length=270, Percent_Identity=22.2222222222222, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35224; Mature: 35224

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFFRNIWRYKALIIMALPGAIWMIFFFYIPVFANVVAFKDFHIDPDGFLASLTNSPWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
GFKNFEFLFSSGAAFDITRNTVLYNVGFITLNLIISIAFAIIMSELRNKKLVKVYQTMSL
CCCCHHHHHCCCCEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LPYFLSWVVISYFVYAFLAPGNKGIFNQMIMHNGGMPVNWYQEPKYWVFIILFIGVWKGI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHCC
GYNSIIYFATVMGINPTYYEAAMVDGATKWQQIKNITIPQVVPLMTILTILAVGNIFRAD
CCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FGLFYNVPRQSGALTPVTQVLDTYIYNGLANTGDLGMATAAALYQSVVGFILLMITNFFA
HHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLDSDSALF
HHCCCCCCCC
>Mature Secondary Structure
MKKFFRNIWRYKALIIMALPGAIWMIFFFYIPVFANVVAFKDFHIDPDGFLASLTNSPWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
GFKNFEFLFSSGAAFDITRNTVLYNVGFITLNLIISIAFAIIMSELRNKKLVKVYQTMSL
CCCCHHHHHCCCCEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LPYFLSWVVISYFVYAFLAPGNKGIFNQMIMHNGGMPVNWYQEPKYWVFIILFIGVWKGI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHCC
GYNSIIYFATVMGINPTYYEAAMVDGATKWQQIKNITIPQVVPLMTILTILAVGNIFRAD
CCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FGLFYNVPRQSGALTPVTQVLDTYIYNGLANTGDLGMATAAALYQSVVGFILLMITNFFA
HHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLDSDSALF
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]