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The map label for this gene is ypcH

Identifier: 15673478

GI number: 15673478

Start: 1529029

End: 1529949

Strand: Reverse

Name: ypcH

Synonym: L128777

Alternate gene names: 15673478

Gene position: 1529949-1529029 (Counterclockwise)

Preceding gene: 15673479

Following gene: 15673477

Centisome position: 64.68

GC content: 36.59

Gene sequence:

>921_bases
ATGAAAAAGAAAAAAATAGCCTCATTATCTGTTCGAGGATTTAATCGTCCAGTCAACTTTGTTTTTAATATCGTCATTGC
ACTTTTTGCAATCTCTTGTGTCTTACCTTTCCTCTTTGTCTTAGCCATTTCGCTGACAAAGGAGTCGGCTTTGCAACAAT
TCGGTTATAGCTTTTGGCCACGAGAATGGAGCTTTTATGCTTATACATTCTTATTTGACCAAATGAAAGATAAAATGTTG
CAATCATTGTTTGTCACAGTACTTGTTACGGTTCTAGGGACTGCAATTAATTCTACAGCAACTTCACTTTATGCTTATGC
GATTTCTAGAAATAACTTTCCTTTCCGTCGATTCTTTACAATCTTTTGTTTGATCACTATGTTGTTCTCACCTGGGATGA
TTGCGAATTACTTGGTAATGACTAACCTTCTACAATTGAAAGATACAATTTGGGCTTTGATTTTGCCAATGGCTGTCTCG
CCATTTAACATCATTGTTATGAGAACTTTCTTTAAACGTTCAGTTCCAGATTCAATTATTGAATCTGCCCGAATTGACGG
AGCAAGTGAACTTAGAATTTTCACTCAAATTGTTCTTCCTTTAGCAGTACCTGGGATTGCAACCATTTCCCTCTTTGCGG
CCTTAGGTTATTGGAATGACTGGTTTAATGCTCTTCTTTATATCTCAAATGATAAATTGATTCCATTGCAATATTTGCTG
ATGAAAGTTCAAAACAACTTACAATTCTTAACACAAAATGCAGGAGCAGGCTCACAGATTGCCGGAGGTTTAGCGGCTCT
CCCTGGTGAATCAGCACGTATGGCAATTGTTATCATTTCAACTTTACCAATTGCGATTAGTTATCCATTCTTCCAACGTT
ATTTTGTCAAAGGTTTAACCATTGGTGGCGTTAAAGAATAA

Upstream 100 bases:

>100_bases
AACTTCTTTGCCCGCAGACTTGATAGTGATTCAGCATTATTCTAAGAAAGGAGGAAGCTAGTAGGTCAAGCCTTTTATCA
AACTTGAAAGCTAATAATAT

Downstream 100 bases:

>100_bases
GAAGACTCTGCTTATTTAGCAGAGTAAATTTAGACGCTTAAAGAAAGCGCAAACATTAATAAAGTTAAAAAAATTGGGGA
AACCCTAAAGGAGCATACTC

Product: sugar ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKKKKIASLSVRGFNRPVNFVFNIVIALFAISCVLPFLFVLAISLTKESALQQFGYSFWPREWSFYAYTFLFDQMKDKML
QSLFVTVLVTVLGTAINSTATSLYAYAISRNNFPFRRFFTIFCLITMLFSPGMIANYLVMTNLLQLKDTIWALILPMAVS
PFNIIVMRTFFKRSVPDSIIESARIDGASELRIFTQIVLPLAVPGIATISLFAALGYWNDWFNALLYISNDKLIPLQYLL
MKVQNNLQFLTQNAGAGSQIAGGLAALPGESARMAIVIISTLPIAISYPFFQRYFVKGLTIGGVKE

Sequences:

>Translated_306_residues
MKKKKIASLSVRGFNRPVNFVFNIVIALFAISCVLPFLFVLAISLTKESALQQFGYSFWPREWSFYAYTFLFDQMKDKML
QSLFVTVLVTVLGTAINSTATSLYAYAISRNNFPFRRFFTIFCLITMLFSPGMIANYLVMTNLLQLKDTIWALILPMAVS
PFNIIVMRTFFKRSVPDSIIESARIDGASELRIFTQIVLPLAVPGIATISLFAALGYWNDWFNALLYISNDKLIPLQYLL
MKVQNNLQFLTQNAGAGSQIAGGLAALPGESARMAIVIISTLPIAISYPFFQRYFVKGLTIGGVKE
>Mature_306_residues
MKKKKIASLSVRGFNRPVNFVFNIVIALFAISCVLPFLFVLAISLTKESALQQFGYSFWPREWSFYAYTFLFDQMKDKML
QSLFVTVLVTVLGTAINSTATSLYAYAISRNNFPFRRFFTIFCLITMLFSPGMIANYLVMTNLLQLKDTIWALILPMAVS
PFNIIVMRTFFKRSVPDSIIESARIDGASELRIFTQIVLPLAVPGIATISLFAALGYWNDWFNALLYISNDKLIPLQYLL
MKVQNNLQFLTQNAGAGSQIAGGLAALPGESARMAIVIISTLPIAISYPFFQRYFVKGLTIGGVKE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=25.7839721254355, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789860, Length=224, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34358; Mature: 34358

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKIASLSVRGFNRPVNFVFNIVIALFAISCVLPFLFVLAISLTKESALQQFGYSFWP
CCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
REWSFYAYTFLFDQMKDKMLQSLFVTVLVTVLGTAINSTATSLYAYAISRNNFPFRRFFT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH
IFCLITMLFSPGMIANYLVMTNLLQLKDTIWALILPMAVSPFNIIVMRTFFKRSVPDSII
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
ESARIDGASELRIFTQIVLPLAVPGIATISLFAALGYWNDWFNALLYISNDKLIPLQYLL
HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHH
MKVQNNLQFLTQNAGAGSQIAGGLAALPGESARMAIVIISTLPIAISYPFFQRYFVKGLT
HHHHHHHHHHHCCCCCCCHHCCCHHCCCCCCCCEEEEEEECCCHHHCCHHHHHHHHHCCC
IGGVKE
CCCCCC
>Mature Secondary Structure
MKKKKIASLSVRGFNRPVNFVFNIVIALFAISCVLPFLFVLAISLTKESALQQFGYSFWP
CCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
REWSFYAYTFLFDQMKDKMLQSLFVTVLVTVLGTAINSTATSLYAYAISRNNFPFRRFFT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH
IFCLITMLFSPGMIANYLVMTNLLQLKDTIWALILPMAVSPFNIIVMRTFFKRSVPDSII
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
ESARIDGASELRIFTQIVLPLAVPGIATISLFAALGYWNDWFNALLYISNDKLIPLQYLL
HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHH
MKVQNNLQFLTQNAGAGSQIAGGLAALPGESARMAIVIISTLPIAISYPFFQRYFVKGLT
HHHHHHHHHHHCCCCCCCHHCCCHHCCCCCCCCEEEEEEECCCHHHCCHHHHHHHHHCCC
IGGVKE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]