| Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
|---|---|
| Accession | NC_002662 |
| Length | 2,365,589 |
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The map label for this gene is ypdB
Identifier: 15673480
GI number: 15673480
Start: 1530934
End: 1533633
Strand: Reverse
Name: ypdB
Synonym: L130682
Alternate gene names: 15673480
Gene position: 1533633-1530934 (Counterclockwise)
Preceding gene: 15673481
Following gene: 15673479
Centisome position: 64.83
GC content: 36.81
Gene sequence:
>2700_bases ATGAAAAAGAAAACGGTACATATCATCTCTCACAGTCATTGGGATCGAGAATGGTATATGGCTTATGAAGAACATCATAT GCGTTTAGTCAATTTAGTGGATGATTTACTTGATTTATTCAAGGAAGATCCTGAGTTTGATAGCTTTCATTTGGATGGAC AAACGATTATTTTAGATGACTATTTGCAAGTACGTCCCGAGCGTCGTGAGGAAGTACAAGCAGCAATTTCAGCTGGAAAA TTGAAAATTGGTCCATTTTATATCTTACAAGATGATTTCCTCATTAGTTCTGAATCAAACGTTCGTAATATGCTTGTTGG GCGTAAAGAATCGGAGCGTTGGGGGGCTCCAGTTGAGTTGGGGTATTTCCCTGATACTTTTGGGAATATGGGCCAAACGC CACAAATAATGAAAGCGGCAGGACTTAGCGCTGCAGCTTTTGGTCGAGGAGTGAAGCCAATCGGGTTTGATAATCAAGTT TTGGAACAATCAGAGGAAGCCTATAGTTCACAATTTTCAGAAATGTGGTGGGAAGGTCCTGATGGGACAAAAATTCTTGG AATTCTATTTGCCAATTGGTATTCAAATGGAAATGAAATTCCTGCTGAAAAAACAGCAGCACTTGACTTTTGGAATCAAA AATTAGCAGATGTTGAAAAATTTGCTTCGACATCACATCTCTTAATGATGAATGGCGTGGATCATCAACCAGTTCAGAAA GATTTGAGCAAAGCGATTCGCTTGGCAAATGAACTTTTCCCAGATTATGAGTTTGTTCATTCTAATTGGCCAACTTATTT AGAAGCTGTAAGGTCAGATTTGCCTGAAAACTTATCTACGGTAACAGGGGAACTAACCTCACAGGAAACTGATGGCTGGT ACACTTTAGCAAATACGGCTTCGAGTCGAGTTTATCTCAAACAATGGAATACAAAAGTTGAGCGTCAGTTAGAAAATGTT ACAGAACCTCTCGCCAGTTTAGCTTATCGGGTGACAGGAGAGTATCCGCACGACAAATTGACTTATGCTTGGAAAACTTT GATGCAAAATCATCCACATGATAGTATCTGTGGTTGCTCTGTTGACGAAGTTCATCGTGAAATGATGACACGTTTTGAAA AAGCGAATGAAGTAGGAAAATATCTTGCTGATGATGCATTGTTTGAACTCGCTAAAGTGATTGACTTTGAAGGCCAACAT CCTTTTGTAGTTTTTAATACAGCTGGACATTCTAAAACAGGTGAGGCTGAAGTTGAAGTAGTTCTTGAGCGTAAATTATT TAAAGAAGGAATTCCTGAAAAACTTTATGATGAACTTAAGACACAGCCTAAGTCAACTTATAAAGTAATCAATCGTGAAG GTCAAGAAGTCCCAGCTGAAATCAGTGAAGAAGAAGTCTTATTTGATTATGATTTACCGAAAGATCGTTTCCGAGTTCCT TACATGAAACGATTTGTGAAAGTGAAATTATTTTTAAATGAAATGAGTGCTTTTTCTTGGGAAAGTTTTGATTTGGTACT TACTGACGATGCTGACAGCTTTGATAATAGTTCTGTCAGTAATAATGAAAGTATGATTTCTGGTCAAACTATTGAAAATG AAAGTTTGAAACTGACAGTTAATCATAATGGAACATTGAGTATTTTTGATAAGTCGCTCAATAAAGTTTTTAAAGACTTG CTTGTCTTTGAAGACACTGGTGATATTGGAAATGAATATATCTATTTCCAACCTAAAAATACCAAACCAATTCTTTCTAC TGACAGTCCTGTTGAGTTTTCAATTATTACTGACAGAGCAGAAATTGCCGAAGTTCAGCTTAAACAAGTGCTGATGATTC CTGAATCTGCTGACGAATTATTGGATGAGGAACAAAAAAAGGTTTTGGAATTCCGTTATCGTAATGCTGGTCGTTCTGAT AAACTTTTACCTTTAGAGGTAACAAGCAAAATCACTGTACGTAAAAATTCAAAAAAAGTTGATTTTGAAACAAGCATTGA TAATCAAATGAAAGATCACAGACTTCGTGTACTATTCCCAGCGGGATTAACAAGCGAAAATCACGAAGCTGACAGTATTT ATGAAGTAGTGACAAGACCTAATGTTATGCCTGAAACTTGGGAAAATCCAACAAATCCACAGCATCAGCAAGCTTTCGTT AATCTTCATAATGAAGAATATGGTTTAACTGTTGGTAATTTTGGTTTAAATGAATACGAAATTACTGACAGTGCAAATAT TGCATTAACTTTACTTAGAGGAGTTGGCGAACTTGGTGATTGGGGTTACTTCCCAACACCAGAGGCTCAAACTTTAGGAC GTCATACTTTTAACTATAGTTTAGAATTTCATGGACCGGCTTACGAACGTTATGAAACTTATCAACATGCTTATGTTGCA CAAGTTCCATTTTCAACGGTAGAACTGACAAATCCGTCAGCAGAAAAAACTTTACCGTCAGCTGGGAAAATATTAGAAAT TGATACTGATAAATTTGCTATCACGGCATTGAAACGTCGCGAATCAGATAATGGTCTAGTTTTACGAGGCTACAATATGT CTGGTCAGTCATTAAGTTTAGCGCTCGAAGAAGAAGCGAAATTACTTAATTTACTCGAAGATGAAATTGAAGCAGACTCA CAAACACAAATTGCAGCTCACGAAATCCGGACTTTGTTGATTAAGGAGAAAAATCAATGA
Upstream 100 bases:
>100_bases AGCTGGGCTAATATGATGTTTTGTGAGTTAGTCATGGATTATTTTGATATCCGAATTGAAAAATAAGTTAATGAGATTAG TTTTAGAAAGATAGAGCTTT
Downstream 100 bases:
>100_bases AAAAATTTTTTCGGAATATTTGGCGCTATAAAGCACTGATAATTATGGCTCTGCCAGGTGCAATTTGGATGATATTCTTC TTTTATATTCCAGTATTTGC
Product: sugar hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MKKKTVHIISHSHWDREWYMAYEEHHMRLVNLVDDLLDLFKEDPEFDSFHLDGQTIILDDYLQVRPERREEVQAAISAGK LKIGPFYILQDDFLISSESNVRNMLVGRKESERWGAPVELGYFPDTFGNMGQTPQIMKAAGLSAAAFGRGVKPIGFDNQV LEQSEEAYSSQFSEMWWEGPDGTKILGILFANWYSNGNEIPAEKTAALDFWNQKLADVEKFASTSHLLMMNGVDHQPVQK DLSKAIRLANELFPDYEFVHSNWPTYLEAVRSDLPENLSTVTGELTSQETDGWYTLANTASSRVYLKQWNTKVERQLENV TEPLASLAYRVTGEYPHDKLTYAWKTLMQNHPHDSICGCSVDEVHREMMTRFEKANEVGKYLADDALFELAKVIDFEGQH PFVVFNTAGHSKTGEAEVEVVLERKLFKEGIPEKLYDELKTQPKSTYKVINREGQEVPAEISEEEVLFDYDLPKDRFRVP YMKRFVKVKLFLNEMSAFSWESFDLVLTDDADSFDNSSVSNNESMISGQTIENESLKLTVNHNGTLSIFDKSLNKVFKDL LVFEDTGDIGNEYIYFQPKNTKPILSTDSPVEFSIITDRAEIAEVQLKQVLMIPESADELLDEEQKKVLEFRYRNAGRSD KLLPLEVTSKITVRKNSKKVDFETSIDNQMKDHRLRVLFPAGLTSENHEADSIYEVVTRPNVMPETWENPTNPQHQQAFV NLHNEEYGLTVGNFGLNEYEITDSANIALTLLRGVGELGDWGYFPTPEAQTLGRHTFNYSLEFHGPAYERYETYQHAYVA QVPFSTVELTNPSAEKTLPSAGKILEIDTDKFAITALKRRESDNGLVLRGYNMSGQSLSLALEEEAKLLNLLEDEIEADS QTQIAAHEIRTLLIKEKNQ
Sequences:
>Translated_899_residues MKKKTVHIISHSHWDREWYMAYEEHHMRLVNLVDDLLDLFKEDPEFDSFHLDGQTIILDDYLQVRPERREEVQAAISAGK LKIGPFYILQDDFLISSESNVRNMLVGRKESERWGAPVELGYFPDTFGNMGQTPQIMKAAGLSAAAFGRGVKPIGFDNQV LEQSEEAYSSQFSEMWWEGPDGTKILGILFANWYSNGNEIPAEKTAALDFWNQKLADVEKFASTSHLLMMNGVDHQPVQK DLSKAIRLANELFPDYEFVHSNWPTYLEAVRSDLPENLSTVTGELTSQETDGWYTLANTASSRVYLKQWNTKVERQLENV TEPLASLAYRVTGEYPHDKLTYAWKTLMQNHPHDSICGCSVDEVHREMMTRFEKANEVGKYLADDALFELAKVIDFEGQH PFVVFNTAGHSKTGEAEVEVVLERKLFKEGIPEKLYDELKTQPKSTYKVINREGQEVPAEISEEEVLFDYDLPKDRFRVP YMKRFVKVKLFLNEMSAFSWESFDLVLTDDADSFDNSSVSNNESMISGQTIENESLKLTVNHNGTLSIFDKSLNKVFKDL LVFEDTGDIGNEYIYFQPKNTKPILSTDSPVEFSIITDRAEIAEVQLKQVLMIPESADELLDEEQKKVLEFRYRNAGRSD KLLPLEVTSKITVRKNSKKVDFETSIDNQMKDHRLRVLFPAGLTSENHEADSIYEVVTRPNVMPETWENPTNPQHQQAFV NLHNEEYGLTVGNFGLNEYEITDSANIALTLLRGVGELGDWGYFPTPEAQTLGRHTFNYSLEFHGPAYERYETYQHAYVA QVPFSTVELTNPSAEKTLPSAGKILEIDTDKFAITALKRRESDNGLVLRGYNMSGQSLSLALEEEAKLLNLLEDEIEADS QTQIAAHEIRTLLIKEKNQ >Mature_899_residues MKKKTVHIISHSHWDREWYMAYEEHHMRLVNLVDDLLDLFKEDPEFDSFHLDGQTIILDDYLQVRPERREEVQAAISAGK LKIGPFYILQDDFLISSESNVRNMLVGRKESERWGAPVELGYFPDTFGNMGQTPQIMKAAGLSAAAFGRGVKPIGFDNQV LEQSEEAYSSQFSEMWWEGPDGTKILGILFANWYSNGNEIPAEKTAALDFWNQKLADVEKFASTSHLLMMNGVDHQPVQK DLSKAIRLANELFPDYEFVHSNWPTYLEAVRSDLPENLSTVTGELTSQETDGWYTLANTASSRVYLKQWNTKVERQLENV TEPLASLAYRVTGEYPHDKLTYAWKTLMQNHPHDSICGCSVDEVHREMMTRFEKANEVGKYLADDALFELAKVIDFEGQH PFVVFNTAGHSKTGEAEVEVVLERKLFKEGIPEKLYDELKTQPKSTYKVINREGQEVPAEISEEEVLFDYDLPKDRFRVP YMKRFVKVKLFLNEMSAFSWESFDLVLTDDADSFDNSSVSNNESMISGQTIENESLKLTVNHNGTLSIFDKSLNKVFKDL LVFEDTGDIGNEYIYFQPKNTKPILSTDSPVEFSIITDRAEIAEVQLKQVLMIPESADELLDEEQKKVLEFRYRNAGRSD KLLPLEVTSKITVRKNSKKVDFETSIDNQMKDHRLRVLFPAGLTSENHEADSIYEVVTRPNVMPETWENPTNPQHQQAFV NLHNEEYGLTVGNFGLNEYEITDSANIALTLLRGVGELGDWGYFPTPEAQTLGRHTFNYSLEFHGPAYERYETYQHAYVA QVPFSTVELTNPSAEKTLPSAGKILEIDTDKFAITALKRRESDNGLVLRGYNMSGQSLSLALEEEAKLLNLLEDEIEADS QTQIAAHEIRTLLIKEKNQ
Specific function: May hydrolyze mannosyl-D-glycerate to mannose-6- phosphate and glycerate [H]
COG id: COG0383
COG function: function code G; Alpha-mannosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 38 family [H]
Homologues:
Organism=Escherichia coli, GI1786952, Length=880, Percent_Identity=27.6136363636364, Blast_Score=317, Evalue=2e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR011330 - InterPro: IPR011682 - InterPro: IPR015341 - InterPro: IPR000602 [H]
Pfam domain/function: PF09261 Alpha-mann_mid; PF01074 Glyco_hydro_38; PF07748 Glyco_hydro_38C [H]
EC number: NA
Molecular weight: Translated: 102663; Mature: 102663
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKTVHIISHSHWDREWYMAYEEHHMRLVNLVDDLLDLFKEDPEFDSFHLDGQTIILDD CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEC YLQVRPERREEVQAAISAGKLKIGPFYILQDDFLISSESNVRNMLVGRKESERWGAPVEL HHHCCCCHHHHHHHHHHCCCEEECCEEEEECCEEECCCCCHHHHHCCCCCHHHCCCCEEE GYFPDTFGNMGQTPQIMKAAGLSAAAFGRGVKPIGFDNQVLEQSEEAYSSQFSEMWWEGP CCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC DGTKILGILFANWYSNGNEIPAEKTAALDFWNQKLADVEKFASTSHLLMMNGVDHQPVQK CCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH DLSKAIRLANELFPDYEFVHSNWPTYLEAVRSDLPENLSTVTGELTSQETDGWYTLANTA HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCC SSRVYLKQWNTKVERQLENVTEPLASLAYRVTGEYPHDKLTYAWKTLMQNHPHDSICGCS CCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC VDEVHREMMTRFEKANEVGKYLADDALFELAKVIDFEGQHPFVVFNTAGHSKTGEAEVEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHH VLERKLFKEGIPEKLYDELKTQPKSTYKVINREGQEVPAEISEEEVLFDYDLPKDRFRVP HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHCCCH YMKRFVKVKLFLNEMSAFSWESFDLVLTDDADSFDNSSVSNNESMISGQTIENESLKLTV HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCEECCCCEEEEE NHNGTLSIFDKSLNKVFKDLLVFEDTGDIGNEYIYFQPKNTKPILSTDSPVEFSIITDRA CCCCEEEEHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCEECCCCCEEEEEEECHH EIAEVQLKQVLMIPESADELLDEEQKKVLEFRYRNAGRSDKLLPLEVTSKITVRKNSKKV HHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCE DFETSIDNQMKDHRLRVLFPAGLTSENHEADSIYEVVTRPNVMPETWENPTNPQHQQAFV EEECCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH NLHNEEYGLTVGNFGLNEYEITDSANIALTLLRGVGELGDWGYFPTPEAQTLGRHTFNYS EECCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCEEEEEE LEFHGPAYERYETYQHAYVAQVPFSTVELTNPSAEKTLPSAGKILEIDTDKFAITALKRR EEECCCHHHHHHHHHHEEEEECCCCEEEECCCCHHHCCCCCCCEEEECCCCEEEHHHHHC ESDNGLVLRGYNMSGQSLSLALEEEAKLLNLLEDEIEADSQTQIAAHEIRTLLIKEKNQ CCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCC >Mature Secondary Structure MKKKTVHIISHSHWDREWYMAYEEHHMRLVNLVDDLLDLFKEDPEFDSFHLDGQTIILDD CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEC YLQVRPERREEVQAAISAGKLKIGPFYILQDDFLISSESNVRNMLVGRKESERWGAPVEL HHHCCCCHHHHHHHHHHCCCEEECCEEEEECCEEECCCCCHHHHHCCCCCHHHCCCCEEE GYFPDTFGNMGQTPQIMKAAGLSAAAFGRGVKPIGFDNQVLEQSEEAYSSQFSEMWWEGP CCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC DGTKILGILFANWYSNGNEIPAEKTAALDFWNQKLADVEKFASTSHLLMMNGVDHQPVQK CCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH DLSKAIRLANELFPDYEFVHSNWPTYLEAVRSDLPENLSTVTGELTSQETDGWYTLANTA HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCC SSRVYLKQWNTKVERQLENVTEPLASLAYRVTGEYPHDKLTYAWKTLMQNHPHDSICGCS CCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC VDEVHREMMTRFEKANEVGKYLADDALFELAKVIDFEGQHPFVVFNTAGHSKTGEAEVEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHH VLERKLFKEGIPEKLYDELKTQPKSTYKVINREGQEVPAEISEEEVLFDYDLPKDRFRVP HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHCCCH YMKRFVKVKLFLNEMSAFSWESFDLVLTDDADSFDNSSVSNNESMISGQTIENESLKLTV HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCEECCCCEEEEE NHNGTLSIFDKSLNKVFKDLLVFEDTGDIGNEYIYFQPKNTKPILSTDSPVEFSIITDRA CCCCEEEEHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCEECCCCCEEEEEEECHH EIAEVQLKQVLMIPESADELLDEEQKKVLEFRYRNAGRSDKLLPLEVTSKITVRKNSKKV HHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCE DFETSIDNQMKDHRLRVLFPAGLTSENHEADSIYEVVTRPNVMPETWENPTNPQHQQAFV EEECCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH NLHNEEYGLTVGNFGLNEYEITDSANIALTLLRGVGELGDWGYFPTPEAQTLGRHTFNYS EECCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCEEEEEE LEFHGPAYERYETYQHAYVAQVPFSTVELTNPSAEKTLPSAGKILEIDTDKFAITALKRR EEECCCHHHHHHHHHHEEEEECCCCEEEECCCCHHHCCCCCCCEEEECCCCEEEHHHHHC ESDNGLVLRGYNMSGQSLSLALEEEAKLLNLLEDEIEADSQTQIAAHEIRTLLIKEKNQ CCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]