Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
---|---|
Accession | NC_002662 |
Length | 2,365,589 |
Click here to switch to the map view.
The map label for this gene is acmD
Identifier: 15672523
GI number: 15672523
Start: 527413
End: 528498
Strand: Direct
Name: acmD
Synonym: L127411
Alternate gene names: 15672523
Gene position: 527413-528498 (Clockwise)
Preceding gene: 15672520
Following gene: 15672527
Centisome position: 22.3
GC content: 38.31
Gene sequence:
>1086_bases ATGAAACAGAAACATAAATTAGCGCTTGGTGCGTCAATTGTTGCTTTGGCAAGTCTTGGTGGGATTAAAGCACAAGCTGC ATCTGTTCAAGAAATTATTAACGCTGCGGTACCAGTGGCAAATGACTACGGACTTTATCCATCAGTAATGATTGCCCAAG GGATTTTAGAATCAAGTGGTGGACAAAGTGCCTTAGCAAGCAATTATAATAATATTTTTGGAGTTAAATACACTTCTGGT ACACCTGTTTATCTACCAACACAAGAGTATTTGAATGGAACAATGACAAATGTTGTTGAACCCTTCCAAGCTTATAGCTC AGTTTATGACGCATGTGTTGCCCAAGCTAAAATGTTACGTGCTTCATCATATTATTCTGGGGCTTGGCGTGAAAATACAA GTTCTTACTTAGATGCGACAGCTTGGCTTGAAGGACGTTATGCCACGGATCCAACTTATGCTTCTAAATTGAATAGCGTG ATTTCTGAACTTGGTTTAAGTGTTTATGACCAAGGAGGAGAAATATCAGGAGGAACTGCTGTTACAACTAGTTCATCAGC CTCAACAAATTCAGCTGGCACATACAAAGTACAAGAGGGTGATTCATTATCAGCAATCGCTGCTCAATATGGTACAACTG TTGATGCACTTGTGTCAGCAAATAGTTTAGAAAATGCGAACGATATTCATGTAGGAGAAGTTTTGCAAGTTGCTGGTGCT AGCACAACTACAACAAGTACCAATACAACTTCCAATGTATCGTCAAGTTCTACTTATACCGTCAAATCAGGAGATAGTTT ATATTCGATTGCGGAACAATATGGAATGACTGTTTCATCACTGATGTCAGCCAATGGAATTTATGATGTTAATTCAATGC TTCAAGTAGGACAAGTATTGCAAGTAACTGTAAGTACTAGTGCAACAACTTCAAACACAACGACTTCAAACAGTTATACA ATTCAAAATGGTGACAGCATTTATTCAATTGCCACAGCAAATGGTATGACAGCTGACCAATTAGCAGCCCTCAATGGATT TGGAATTAATGACATGATTCATCCAGGACAAACAATTAGAATCTAA
Upstream 100 bases:
>100_bases TTTACAAATCGCCAGAAAATTTTTATACTAGTAAGTAACAATAAAAATACAATTGGCATATTTTAGTCAAAAAATTATCT AATATTAAAGAGGAGACTCG
Downstream 100 bases:
>100_bases ATAAAAAAGTTACTGACAATAGAATCAGTAACTTTTTTTTATTGGAAAAAAGGATTATTTTGTTTTTCAGTACCAATACT TGTTTTGGGACCATGACCAG
Product: N-acetylmuramidase
Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]
Alternate protein names: Beta-glycosidase; Peptidoglycan hydrolase [H]
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MKQKHKLALGASIVALASLGGIKAQAASVQEIINAAVPVANDYGLYPSVMIAQGILESSGGQSALASNYNNIFGVKYTSG TPVYLPTQEYLNGTMTNVVEPFQAYSSVYDACVAQAKMLRASSYYSGAWRENTSSYLDATAWLEGRYATDPTYASKLNSV ISELGLSVYDQGGEISGGTAVTTSSSASTNSAGTYKVQEGDSLSAIAAQYGTTVDALVSANSLENANDIHVGEVLQVAGA STTTTSTNTTSNVSSSSTYTVKSGDSLYSIAEQYGMTVSSLMSANGIYDVNSMLQVGQVLQVTVSTSATTSNTTTSNSYT IQNGDSIYSIATANGMTADQLAALNGFGINDMIHPGQTIRI
Sequences:
>Translated_361_residues MKQKHKLALGASIVALASLGGIKAQAASVQEIINAAVPVANDYGLYPSVMIAQGILESSGGQSALASNYNNIFGVKYTSG TPVYLPTQEYLNGTMTNVVEPFQAYSSVYDACVAQAKMLRASSYYSGAWRENTSSYLDATAWLEGRYATDPTYASKLNSV ISELGLSVYDQGGEISGGTAVTTSSSASTNSAGTYKVQEGDSLSAIAAQYGTTVDALVSANSLENANDIHVGEVLQVAGA STTTTSTNTTSNVSSSSTYTVKSGDSLYSIAEQYGMTVSSLMSANGIYDVNSMLQVGQVLQVTVSTSATTSNTTTSNSYT IQNGDSIYSIATANGMTADQLAALNGFGINDMIHPGQTIRI >Mature_361_residues MKQKHKLALGASIVALASLGGIKAQAASVQEIINAAVPVANDYGLYPSVMIAQGILESSGGQSALASNYNNIFGVKYTSG TPVYLPTQEYLNGTMTNVVEPFQAYSSVYDACVAQAKMLRASSYYSGAWRENTSSYLDATAWLEGRYATDPTYASKLNSV ISELGLSVYDQGGEISGGTAVTTSSSASTNSAGTYKVQEGDSLSAIAAQYGTTVDALVSANSLENANDIHVGEVLQVAGA STTTTSTNTTSNVSSSSTYTVKSGDSLYSIAEQYGMTVSSLMSANGIYDVNSMLQVGQVLQVTVSTSATTSNTTTSNSYT IQNGDSIYSIATANGMTADQLAALNGFGINDMIHPGQTIRI
Specific function: Hydrolyzes the cell wall of E.faecalis and M.lysodeikticus. May play an important role in cell wall growth and cell separation [H]
COG id: COG1705
COG function: function code NU; Muramidase (flagellum-specific)
Gene ontology:
Cell location: Secreted (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 6 LysM repeats [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013338 - InterPro: IPR002901 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01832 Glucosaminidase; PF01476 LysM [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 37484; Mature: 37484
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQKHKLALGASIVALASLGGIKAQAASVQEIINAAVPVANDYGLYPSVMIAQGILESSG CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC GQSALASNYNNIFGVKYTSGTPVYLPTQEYLNGTMTNVVEPFQAYSSVYDACVAQAKMLR CCHHHHCCCCCEEEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSYYSGAWRENTSSYLDATAWLEGRYATDPTYASKLNSVISELGLSVYDQGGEISGGTA HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEE VTTSSSASTNSAGTYKVQEGDSLSAIAAQYGTTVDALVSANSLENANDIHVGEVLQVAGA EEECCCCCCCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCC STTTTSTNTTSNVSSSSTYTVKSGDSLYSIAEQYGMTVSSLMSANGIYDVNSMLQVGQVL CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHCCEE QVTVSTSATTSNTTTSNSYTIQNGDSIYSIATANGMTADQLAALNGFGINDMIHPGQTIR EEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEC I C >Mature Secondary Structure MKQKHKLALGASIVALASLGGIKAQAASVQEIINAAVPVANDYGLYPSVMIAQGILESSG CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC GQSALASNYNNIFGVKYTSGTPVYLPTQEYLNGTMTNVVEPFQAYSSVYDACVAQAKMLR CCHHHHCCCCCEEEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSYYSGAWRENTSSYLDATAWLEGRYATDPTYASKLNSVISELGLSVYDQGGEISGGTA HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEE VTTSSSASTNSAGTYKVQEGDSLSAIAAQYGTTVDALVSANSLENANDIHVGEVLQVAGA EEECCCCCCCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCC STTTTSTNTTSNVSSSSTYTVKSGDSLYSIAEQYGMTVSSLMSANGIYDVNSMLQVGQVL CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHCCEE QVTVSTSATTSNTTTSNSYTIQNGDSIYSIATANGMTADQLAALNGFGINDMIHPGQTIR EEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEC I C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1679432; 12663927 [H]