Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is yfcF
Identifier: 15672520
GI number: 15672520
Start: 523468
End: 524346
Strand: Direct
Name: yfcF
Synonym: L123471
Alternate gene names: 15672520
Gene position: 523468-524346 (Clockwise)
Preceding gene: 15672519
Following gene: 15672523
Centisome position: 22.13
GC content: 35.84
Gene sequence:
>879_bases ATGGAAAAAAGAACAAGAGATTATAAAAAAAATGGCTCTAAAAAAATGAGTAAACAAGGGAAAGTACTTATTCTAGCTTT ATTAGCATTTCTAATTTTCTTTGTTGGCTTTAAAATATATCATAGTAAAGATGTTCAGGCTTCAACGATTAAATTGGTTA ATAAATCAAATGAGACTTATGCTTACTCTGGGTCAAAAAAATTAACGGGTCTTCAAAAAATTAATGGGAATAATTATTAT TTTGATTCAACAACAGGTGTGATGAAGACAGGTTTGATGACTTTGGATGGTGGAACGGTTTATTTCAGTCCACAAACGGG GAAAATGGTTTATGGATTACAAAAAATTAATGGTTATTATTACTATTTTACAAAAAAGACGGGTAAAGATGATGTGGTTA AAGCTTATGAAGCGGTGGCCAGCCAATTGAAATCTGATAATTCAGTGATTGAAAAAACAATTTCATCAGGAATGAAACTG GTTGGGAAAAGTCCATATGTTTATGGTGGAGGGCGTACTGATGATTCGGTAGCTGCCAATGAATTTGATTGTTCGAGTTT TATTGCTCAAATGTTCCGGTTAGGCGGTCAATCTTTGGTTTATCAATTTGCGGCTTCAACCTCCTTGCTAGCTCAAACTG GCGAGGCTGAAGATTGGTCAGATAAGGCGCGTGGTGATTTATTAATTACAGCTGACGATGCAAGTGAGGATGAGCAACAT GCGGCTATCTATCTTGGCGGAGGATTTATTCTACATGACTCAACAAGTACTAATGGAGTGAGCATTAGTCGTTTAAATCA GGTCATCAATAAGAAAGTTTTAGGAACAATGACTTGGGGACAACTTTTTGAGCCAGGACATGTTCGTCGTGAAGTTTAA
Upstream 100 bases:
>100_bases TATAAAAGTGATTTGAAGATAATTTCAAACCACTTTTCTTATCCAAATCTTAAATTGTTCTTATTAAGTTATCATTAAAC TTGGAGTGGTATAACTAGAT
Downstream 100 bases:
>100_bases AATTTACTGACAGAATAAAAAAATTACTGACAAAAATCTGTCAGTAAATTTTTTTATTATTTAGCGATTTCAGCATGACG TAAATCAAAAATCATGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase [H]
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MEKRTRDYKKNGSKKMSKQGKVLILALLAFLIFFVGFKIYHSKDVQASTIKLVNKSNETYAYSGSKKLTGLQKINGNNYY FDSTTGVMKTGLMTLDGGTVYFSPQTGKMVYGLQKINGYYYYFTKKTGKDDVVKAYEAVASQLKSDNSVIEKTISSGMKL VGKSPYVYGGGRTDDSVAANEFDCSSFIAQMFRLGGQSLVYQFAASTSLLAQTGEAEDWSDKARGDLLITADDASEDEQH AAIYLGGGFILHDSTSTNGVSISRLNQVINKKVLGTMTWGQLFEPGHVRREV
Sequences:
>Translated_292_residues MEKRTRDYKKNGSKKMSKQGKVLILALLAFLIFFVGFKIYHSKDVQASTIKLVNKSNETYAYSGSKKLTGLQKINGNNYY FDSTTGVMKTGLMTLDGGTVYFSPQTGKMVYGLQKINGYYYYFTKKTGKDDVVKAYEAVASQLKSDNSVIEKTISSGMKL VGKSPYVYGGGRTDDSVAANEFDCSSFIAQMFRLGGQSLVYQFAASTSLLAQTGEAEDWSDKARGDLLITADDASEDEQH AAIYLGGGFILHDSTSTNGVSISRLNQVINKKVLGTMTWGQLFEPGHVRREV >Mature_292_residues MEKRTRDYKKNGSKKMSKQGKVLILALLAFLIFFVGFKIYHSKDVQASTIKLVNKSNETYAYSGSKKLTGLQKINGNNYY FDSTTGVMKTGLMTLDGGTVYFSPQTGKMVYGLQKINGYYYYFTKKTGKDDVVKAYEAVASQLKSDNSVIEKTISSGMKL VGKSPYVYGGGRTDDSVAANEFDCSSFIAQMFRLGGQSLVYQFAASTSLLAQTGEAEDWSDKARGDLLITADDASEDEQH AAIYLGGGFILHDSTSTNGVSISRLNQVINKKVLGTMTWGQLFEPGHVRREV
Specific function: Shows a cell wall hydrolytic DL-endopeptidase activity [H]
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C40 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000064 [H]
Pfam domain/function: PF00877 NLPC_P60 [H]
EC number: NA
Molecular weight: Translated: 32140; Mature: 32140
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKRTRDYKKNGSKKMSKQGKVLILALLAFLIFFVGFKIYHSKDVQASTIKLVNKSNETY CCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCHHEEEEEECCCCEE AYSGSKKLTGLQKINGNNYYFDSTTGVMKTGLMTLDGGTVYFSPQTGKMVYGLQKINGYY EECCCCCCCEEEEECCCEEEEECCCHHHHHCCEEECCCEEEECCCCCCEEEEEEEECCEE YYFTKKTGKDDVVKAYEAVASQLKSDNSVIEKTISSGMKLVGKSPYVYGGGRTDDSVAAN EEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHCCCCEEECCCCCCCCCCCC EFDCSSFIAQMFRLGGQSLVYQFAASTSLLAQTGEAEDWSDKARGDLLITADDASEDEQH CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC AAIYLGGGFILHDSTSTNGVSISRLNQVINKKVLGTMTWGQLFEPGHVRREV EEEEEECEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC >Mature Secondary Structure MEKRTRDYKKNGSKKMSKQGKVLILALLAFLIFFVGFKIYHSKDVQASTIKLVNKSNETY CCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCHHEEEEEECCCCEE AYSGSKKLTGLQKINGNNYYFDSTTGVMKTGLMTLDGGTVYFSPQTGKMVYGLQKINGYY EECCCCCCCEEEEECCCEEEEECCCHHHHHCCEEECCCEEEECCCCCCEEEEEEEECCEE YYFTKKTGKDDVVKAYEAVASQLKSDNSVIEKTISSGMKLVGKSPYVYGGGRTDDSVAAN EEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHCCCCEEECCCCCCCCCCCC EFDCSSFIAQMFRLGGQSLVYQFAASTSLLAQTGEAEDWSDKARGDLLITADDASEDEQH CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC AAIYLGGGFILHDSTSTNGVSISRLNQVINKKVLGTMTWGQLFEPGHVRREV EEEEEECEEEEECCCCCCCEEHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA