Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is yfdB

Identifier: 15672527

GI number: 15672527

Start: 531954

End: 532478

Strand: Direct

Name: yfdB

Synonym: L131937

Alternate gene names: NA

Gene position: 531954-532478 (Clockwise)

Preceding gene: 15672523

Following gene: 15672528

Centisome position: 22.49

GC content: 29.9

Gene sequence:

>525_bases
ATGAATTCACTACTAATCATGGGTTATACAAGTTTTGACCTAGGTATTTTCAATGAAAAAGACATAAAAGTATCAATAAT
AAAAAAAACAATTAGAAGAAAATTAATTAACTTTTTGGAGGAAGGCCTTCGTTGGATTATTTTTACAGGTAATTTGGGTT
TTGAATACTGGGCGTTGGAAGTAGCAAAGGAACTTCAGACAGATTATGACTTTCAAATTGGGACAATTTTTTCTTTTGAA
ACACATGGCCAAAATTGGAACGAAAGTAATCAAGTTAAGTTGGCAGCTTTCAAACAAGTAGATTTTGTGAAATATGCTTT
TGAAACTTATGAAAGTCCAAGCCAATTCCGCCAGTACAATGATTTTATACTGGAAAATACCGAGGGAGCTTTTGTTTTTT
ACGATGAAGAAAATGAGACAAAATTAAAATATATGGTTGAAAAAATGAAACAAAACACTAATTATGAAGTTTATTTGCTT
GATTTTGAAGATTTACAAGAAACTTTTGAAGAAATGAATGAGTGA

Upstream 100 bases:

>100_bases
CCATTAGGATAATTAACCATTCTGTTTTCTACCTTTATAAAATTCTCAGTTAGTTATATAATGTCTATTATAACATAAAT
TTTACAAGGGGAAAATATTT

Downstream 100 bases:

>100_bases
TTTCGTAATTTTTAGAAGAAAATAATTACTAAAAATCATAACGTCACTTTTTTTGCGATATTAATTTTGATATAATACTT
AGCAGATGTAAATTAGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MNSLLIMGYTSFDLGIFNEKDIKVSIIKKTIRRKLINFLEEGLRWIIFTGNLGFEYWALEVAKELQTDYDFQIGTIFSFE
THGQNWNESNQVKLAAFKQVDFVKYAFETYESPSQFRQYNDFILENTEGAFVFYDEENETKLKYMVEKMKQNTNYEVYLL
DFEDLQETFEEMNE

Sequences:

>Translated_174_residues
MNSLLIMGYTSFDLGIFNEKDIKVSIIKKTIRRKLINFLEEGLRWIIFTGNLGFEYWALEVAKELQTDYDFQIGTIFSFE
THGQNWNESNQVKLAAFKQVDFVKYAFETYESPSQFRQYNDFILENTEGAFVFYDEENETKLKYMVEKMKQNTNYEVYLL
DFEDLQETFEEMNE
>Mature_174_residues
MNSLLIMGYTSFDLGIFNEKDIKVSIIKKTIRRKLINFLEEGLRWIIFTGNLGFEYWALEVAKELQTDYDFQIGTIFSFE
THGQNWNESNQVKLAAFKQVDFVKYAFETYESPSQFRQYNDFILENTEGAFVFYDEENETKLKYMVEKMKQNTNYEVYLL
DFEDLQETFEEMNE

Specific function: Unknown

COG id: COG4474

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0398 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010697 [H]

Pfam domain/function: PF06908 DUF1273 [H]

EC number: NA

Molecular weight: Translated: 20858; Mature: 20858

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLLIMGYTSFDLGIFNEKDIKVSIIKKTIRRKLINFLEEGLRWIIFTGNLGFEYWALE
CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
VAKELQTDYDFQIGTIFSFETHGQNWNESNQVKLAAFKQVDFVKYAFETYESPSQFRQYN
HHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHC
DFILENTEGAFVFYDEENETKLKYMVEKMKQNTNYEVYLLDFEDLQETFEEMNE
CCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MNSLLIMGYTSFDLGIFNEKDIKVSIIKKTIRRKLINFLEEGLRWIIFTGNLGFEYWALE
CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
VAKELQTDYDFQIGTIFSFETHGQNWNESNQVKLAAFKQVDFVKYAFETYESPSQFRQYN
HHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHC
DFILENTEGAFVFYDEENETKLKYMVEKMKQNTNYEVYLLDFEDLQETFEEMNE
CCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA