Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is ydgB
Identifier: 15672337
GI number: 15672337
Start: 359989
End: 361362
Strand: Reverse
Name: ydgB
Synonym: L160176
Alternate gene names: 15672337
Gene position: 361362-359989 (Counterclockwise)
Preceding gene: 15672338
Following gene: 15672315
Centisome position: 15.28
GC content: 34.72
Gene sequence:
>1374_bases ATGAATACAAATCAAAATGAAGAAAATAAGCCCTCACAACGTGGTTTAAAAAATAGGCATATTCAACTTATTGCCATTGC TGGAACAATTGGTACGGGATTATTCCTCGGTGCCGGAAAATCGATTCACCTCACCGGCCCATCAATTATTTTTGTTTATT TAATAATCGGTGCGCTTATGTATATTCTCCTAAGAGCTATCGGGGAGATGCTTTACCAAGATCCCAATCAACATTCCTTT TTAAATTTTGTGTCACGTTATCTCGGTGAAAAACCTGGTTACTTTATTCAGTGGTCTTATTTACTGGTTGTTGTTTTTGT AGCTATGGCTGAGCTAATTGCTATTGGGACTTATATTAATTTTTGGTTGCCGGATTTACCAATTTGGATGACAGAAGTCT TTGTATTAGTTCTTCTAACTTTATTGAATACTTTAAATCCAAAATTTTTTGGAGAAACCGAATTTTGGTTTGGGATGATT AAAATTGTGGCGATTATTGGTTTGATTTTAACGGCAATAATCCTCATTTTTAGTCATTATCATACAGGAACTGATACTGT AAGTGTAACTAATATCACCAAAGGCTTCGAGTTCTTCCCAAATGGGCTTTCTAATTTCTTTGAAAGCTTCCAGATGGTCA TGTTTGCTTTTGTTTCGATGGAATTCATCGGAATGACTGCAGCAGAAACAGATAATCCTAGACCAACTTTGAAAAAAGCG ATTAACCAAATTCCAATTCGGATTGTCCTCTTTTATGTTGGGGCACTGTTGGCAATTATGAGTATCTACCAATGGCGCGA TATTCCGGCTGATAAATCACCATTTGTTACCATTTTCCAACTCATTGGAATTAAGTGGGCAGCGGCTTTAGTGAACTTTG TCGTACTAACTTCTGCTGCTTCGGCTTTAAACTCTGCCCTCTTTTCAATCACTCGTAATCTTTATTCTTTATCAAAACTC AATAATGATAAAATACTTAAACCATTTACTAAATTTTCAAAAGCTGGTGTACCAGTAAATGCTTTACTTTTCACCTCATT ATTAATTCTATTTACTCCATTCATCTCGATGATTCCTGCGATTTCTAATTCTTTTGTCTTTATTACAAGTGTCGCAACCA ATCTTTTTCTAGTGGTTTATCTGATGACCTTAATTACTTATCTTAAATATCGGAAATCAAGCGATTTTGATCCTAAAGGG TTTGTTTTACCTGCAGCCCACATCTTTATTCCATTAGCCATTGCTGGATTTGTCTTAATCTTTATTTCACTATTCTGCTT TAAAGATACAATTGTTCCGGCCATTGGTTCTGTGATTTGGGTTCTTATTTTTGGACTATTTACTTTCTTTAAAAAAATAA AAACAGCTGAATAA
Upstream 100 bases:
>100_bases TTGGACTCTACTCGCACTATAAAAAAATCTAAGCGAGTCATCTTTTCCTAGACAGAGTGACTTCTGAAAAACTAAATGAA AAAGCGTATAATATAATATT
Downstream 100 bases:
>100_bases TCAGCTGTTTTTTTAATCTTCAAGTTCGAGTTCAATTTCTTCAGTTTCGACTACTTTTTCTTCTTTTTTAGCTTTAGTTG CCTTAGCTTTTGTTGAAGTA
Product: amino acid permease
Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALMYILLRAIGEMLYQDPNQHSF LNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYINFWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMI KIVAIIGLILTAIILIFSHYHTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAASALNSALFSITRNLYSLSKL NNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPAISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKG FVLPAAHIFIPLAIAGFVLIFISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE
Sequences:
>Translated_457_residues MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALMYILLRAIGEMLYQDPNQHSF LNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYINFWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMI KIVAIIGLILTAIILIFSHYHTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAASALNSALFSITRNLYSLSKL NNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPAISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKG FVLPAAHIFIPLAIAGFVLIFISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE >Mature_457_residues MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALMYILLRAIGEMLYQDPNQHSF LNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYINFWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMI KIVAIIGLILTAIILIFSHYHTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAASALNSALFSITRNLYSLSKL NNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPAISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKG FVLPAAHIFIPLAIAGFVLIFISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE
Specific function: Probable amino-acid or metabolite transport protein [H]
COG id: COG1113
COG function: function code E; Gamma-aminobutyrate permease and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
Organism=Escherichia coli, GI1790653, Length=459, Percent_Identity=42.0479302832244, Blast_Score=351, Evalue=5e-98, Organism=Escherichia coli, GI1786302, Length=462, Percent_Identity=35.2813852813853, Blast_Score=288, Evalue=6e-79, Organism=Escherichia coli, GI1786789, Length=464, Percent_Identity=34.4827586206897, Blast_Score=285, Evalue=5e-78, Organism=Escherichia coli, GI48994972, Length=390, Percent_Identity=36.9230769230769, Blast_Score=278, Evalue=6e-76, Organism=Escherichia coli, GI1786602, Length=452, Percent_Identity=34.5132743362832, Blast_Score=257, Evalue=1e-69, Organism=Escherichia coli, GI87081915, Length=413, Percent_Identity=34.1404358353511, Blast_Score=233, Evalue=1e-62, Organism=Escherichia coli, GI87081708, Length=448, Percent_Identity=31.25, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI1788480, Length=403, Percent_Identity=30.7692307692308, Blast_Score=198, Evalue=6e-52, Organism=Escherichia coli, GI1789017, Length=391, Percent_Identity=28.6445012787724, Blast_Score=191, Evalue=1e-49, Organism=Saccharomyces cerevisiae, GI6324924, Length=426, Percent_Identity=29.81220657277, Blast_Score=174, Evalue=2e-44, Organism=Saccharomyces cerevisiae, GI6324061, Length=420, Percent_Identity=28.3333333333333, Blast_Score=153, Evalue=6e-38, Organism=Saccharomyces cerevisiae, GI6320772, Length=427, Percent_Identity=29.9765807962529, Blast_Score=151, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6322892, Length=412, Percent_Identity=27.9126213592233, Blast_Score=149, Evalue=8e-37, Organism=Saccharomyces cerevisiae, GI6324990, Length=414, Percent_Identity=29.4685990338164, Blast_Score=146, Evalue=7e-36, Organism=Saccharomyces cerevisiae, GI6319608, Length=410, Percent_Identity=25.1219512195122, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6324553, Length=391, Percent_Identity=28.6445012787724, Blast_Score=127, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6321053, Length=412, Percent_Identity=24.5145631067961, Blast_Score=125, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6321629, Length=416, Percent_Identity=24.7596153846154, Blast_Score=124, Evalue=4e-29, Organism=Saccharomyces cerevisiae, GI6324059, Length=361, Percent_Identity=30.4709141274238, Blast_Score=119, Evalue=8e-28, Organism=Saccharomyces cerevisiae, GI6320717, Length=409, Percent_Identity=24.2053789731051, Blast_Score=108, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6319824, Length=416, Percent_Identity=24.7596153846154, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6322967, Length=325, Percent_Identity=27.6923076923077, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6320251, Length=406, Percent_Identity=22.6600985221675, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6319542, Length=403, Percent_Identity=24.5657568238213, Blast_Score=94, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6324981, Length=338, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6319543, Length=412, Percent_Identity=23.5436893203883, Blast_Score=87, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6320364, Length=453, Percent_Identity=22.5165562913907, Blast_Score=75, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 - InterPro: IPR004840 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 51217; Mature: 51217
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: PS00218 AMINO_ACID_PERMEASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALM CCCCCCCCCCCHHCCCCCCCEEEEEEECHHHHHHHEECCCEEEECCHHHHHHHHHHHHHH YILLRAIGEMLYQDPNQHSFLNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYIN HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH FWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMIKIVAIIGLILTAIILIFSHY HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC HTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA CCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SALNSALFSITRNLYSLSKLNNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH ISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKGFVLPAAHIFIPLAIAGFVLI HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALM CCCCCCCCCCCHHCCCCCCCEEEEEEECHHHHHHHEECCCEEEECCHHHHHHHHHHHHHH YILLRAIGEMLYQDPNQHSFLNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYIN HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH FWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMIKIVAIIGLILTAIILIFSHY HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC HTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA CCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SALNSALFSITRNLYSLSKLNNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH ISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKGFVLPAAHIFIPLAIAGFVLI HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]
Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]