Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is ydgB

Identifier: 15672337

GI number: 15672337

Start: 359989

End: 361362

Strand: Reverse

Name: ydgB

Synonym: L160176

Alternate gene names: 15672337

Gene position: 361362-359989 (Counterclockwise)

Preceding gene: 15672338

Following gene: 15672315

Centisome position: 15.28

GC content: 34.72

Gene sequence:

>1374_bases
ATGAATACAAATCAAAATGAAGAAAATAAGCCCTCACAACGTGGTTTAAAAAATAGGCATATTCAACTTATTGCCATTGC
TGGAACAATTGGTACGGGATTATTCCTCGGTGCCGGAAAATCGATTCACCTCACCGGCCCATCAATTATTTTTGTTTATT
TAATAATCGGTGCGCTTATGTATATTCTCCTAAGAGCTATCGGGGAGATGCTTTACCAAGATCCCAATCAACATTCCTTT
TTAAATTTTGTGTCACGTTATCTCGGTGAAAAACCTGGTTACTTTATTCAGTGGTCTTATTTACTGGTTGTTGTTTTTGT
AGCTATGGCTGAGCTAATTGCTATTGGGACTTATATTAATTTTTGGTTGCCGGATTTACCAATTTGGATGACAGAAGTCT
TTGTATTAGTTCTTCTAACTTTATTGAATACTTTAAATCCAAAATTTTTTGGAGAAACCGAATTTTGGTTTGGGATGATT
AAAATTGTGGCGATTATTGGTTTGATTTTAACGGCAATAATCCTCATTTTTAGTCATTATCATACAGGAACTGATACTGT
AAGTGTAACTAATATCACCAAAGGCTTCGAGTTCTTCCCAAATGGGCTTTCTAATTTCTTTGAAAGCTTCCAGATGGTCA
TGTTTGCTTTTGTTTCGATGGAATTCATCGGAATGACTGCAGCAGAAACAGATAATCCTAGACCAACTTTGAAAAAAGCG
ATTAACCAAATTCCAATTCGGATTGTCCTCTTTTATGTTGGGGCACTGTTGGCAATTATGAGTATCTACCAATGGCGCGA
TATTCCGGCTGATAAATCACCATTTGTTACCATTTTCCAACTCATTGGAATTAAGTGGGCAGCGGCTTTAGTGAACTTTG
TCGTACTAACTTCTGCTGCTTCGGCTTTAAACTCTGCCCTCTTTTCAATCACTCGTAATCTTTATTCTTTATCAAAACTC
AATAATGATAAAATACTTAAACCATTTACTAAATTTTCAAAAGCTGGTGTACCAGTAAATGCTTTACTTTTCACCTCATT
ATTAATTCTATTTACTCCATTCATCTCGATGATTCCTGCGATTTCTAATTCTTTTGTCTTTATTACAAGTGTCGCAACCA
ATCTTTTTCTAGTGGTTTATCTGATGACCTTAATTACTTATCTTAAATATCGGAAATCAAGCGATTTTGATCCTAAAGGG
TTTGTTTTACCTGCAGCCCACATCTTTATTCCATTAGCCATTGCTGGATTTGTCTTAATCTTTATTTCACTATTCTGCTT
TAAAGATACAATTGTTCCGGCCATTGGTTCTGTGATTTGGGTTCTTATTTTTGGACTATTTACTTTCTTTAAAAAAATAA
AAACAGCTGAATAA

Upstream 100 bases:

>100_bases
TTGGACTCTACTCGCACTATAAAAAAATCTAAGCGAGTCATCTTTTCCTAGACAGAGTGACTTCTGAAAAACTAAATGAA
AAAGCGTATAATATAATATT

Downstream 100 bases:

>100_bases
TCAGCTGTTTTTTTAATCTTCAAGTTCGAGTTCAATTTCTTCAGTTTCGACTACTTTTTCTTCTTTTTTAGCTTTAGTTG
CCTTAGCTTTTGTTGAAGTA

Product: amino acid permease

Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALMYILLRAIGEMLYQDPNQHSF
LNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYINFWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMI
KIVAIIGLILTAIILIFSHYHTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA
INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAASALNSALFSITRNLYSLSKL
NNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPAISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKG
FVLPAAHIFIPLAIAGFVLIFISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE

Sequences:

>Translated_457_residues
MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALMYILLRAIGEMLYQDPNQHSF
LNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYINFWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMI
KIVAIIGLILTAIILIFSHYHTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA
INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAASALNSALFSITRNLYSLSKL
NNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPAISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKG
FVLPAAHIFIPLAIAGFVLIFISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE
>Mature_457_residues
MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALMYILLRAIGEMLYQDPNQHSF
LNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYINFWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMI
KIVAIIGLILTAIILIFSHYHTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA
INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAASALNSALFSITRNLYSLSKL
NNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPAISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKG
FVLPAAHIFIPLAIAGFVLIFISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE

Specific function: Probable amino-acid or metabolite transport protein [H]

COG id: COG1113

COG function: function code E; Gamma-aminobutyrate permease and related permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1790653, Length=459, Percent_Identity=42.0479302832244, Blast_Score=351, Evalue=5e-98,
Organism=Escherichia coli, GI1786302, Length=462, Percent_Identity=35.2813852813853, Blast_Score=288, Evalue=6e-79,
Organism=Escherichia coli, GI1786789, Length=464, Percent_Identity=34.4827586206897, Blast_Score=285, Evalue=5e-78,
Organism=Escherichia coli, GI48994972, Length=390, Percent_Identity=36.9230769230769, Blast_Score=278, Evalue=6e-76,
Organism=Escherichia coli, GI1786602, Length=452, Percent_Identity=34.5132743362832, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI87081915, Length=413, Percent_Identity=34.1404358353511, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI87081708, Length=448, Percent_Identity=31.25, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1788480, Length=403, Percent_Identity=30.7692307692308, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI1789017, Length=391, Percent_Identity=28.6445012787724, Blast_Score=191, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6324924, Length=426, Percent_Identity=29.81220657277, Blast_Score=174, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6324061, Length=420, Percent_Identity=28.3333333333333, Blast_Score=153, Evalue=6e-38,
Organism=Saccharomyces cerevisiae, GI6320772, Length=427, Percent_Identity=29.9765807962529, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6322892, Length=412, Percent_Identity=27.9126213592233, Blast_Score=149, Evalue=8e-37,
Organism=Saccharomyces cerevisiae, GI6324990, Length=414, Percent_Identity=29.4685990338164, Blast_Score=146, Evalue=7e-36,
Organism=Saccharomyces cerevisiae, GI6319608, Length=410, Percent_Identity=25.1219512195122, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6324553, Length=391, Percent_Identity=28.6445012787724, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6321053, Length=412, Percent_Identity=24.5145631067961, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321629, Length=416, Percent_Identity=24.7596153846154, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6324059, Length=361, Percent_Identity=30.4709141274238, Blast_Score=119, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6320717, Length=409, Percent_Identity=24.2053789731051, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319824, Length=416, Percent_Identity=24.7596153846154, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6322967, Length=325, Percent_Identity=27.6923076923077, Blast_Score=101, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6320251, Length=406, Percent_Identity=22.6600985221675, Blast_Score=94, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6319542, Length=403, Percent_Identity=24.5657568238213, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6324981, Length=338, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319543, Length=412, Percent_Identity=23.5436893203883, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6320364, Length=453, Percent_Identity=22.5165562913907, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51217; Mature: 51217

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALM
CCCCCCCCCCCHHCCCCCCCEEEEEEECHHHHHHHEECCCEEEECCHHHHHHHHHHHHHH
YILLRAIGEMLYQDPNQHSFLNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYIN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
FWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMIKIVAIIGLILTAIILIFSHY
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA
CCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SALNSALFSITRNLYSLSKLNNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKGFVLPAAHIFIPLAIAGFVLI
HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTNQNEENKPSQRGLKNRHIQLIAIAGTIGTGLFLGAGKSIHLTGPSIIFVYLIIGALM
CCCCCCCCCCCHHCCCCCCCEEEEEEECHHHHHHHEECCCEEEECCHHHHHHHHHHHHHH
YILLRAIGEMLYQDPNQHSFLNFVSRYLGEKPGYFIQWSYLLVVVFVAMAELIAIGTYIN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
FWLPDLPIWMTEVFVLVLLTLLNTLNPKFFGETEFWFGMIKIVAIIGLILTAIILIFSHY
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HTGTDTVSVTNITKGFEFFPNGLSNFFESFQMVMFAFVSMEFIGMTAAETDNPRPTLKKA
CCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
INQIPIRIVLFYVGALLAIMSIYQWRDIPADKSPFVTIFQLIGIKWAAALVNFVVLTSAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SALNSALFSITRNLYSLSKLNNDKILKPFTKFSKAGVPVNALLFTSLLILFTPFISMIPA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ISNSFVFITSVATNLFLVVYLMTLITYLKYRKSSDFDPKGFVLPAAHIFIPLAIAGFVLI
HCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FISLFCFKDTIVPAIGSVIWVLIFGLFTFFKKIKTAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]

Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]