Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is yddB

Identifier: 15672315

GI number: 15672315

Start: 332607

End: 333425

Strand: Reverse

Name: yddB

Synonym: L132617

Alternate gene names: 15672315

Gene position: 333425-332607 (Counterclockwise)

Preceding gene: 15672337

Following gene: 15672314

Centisome position: 14.09

GC content: 32.23

Gene sequence:

>819_bases
ATGAAACTTAATAATCAGATTGAAATTCCGGAACTTGGTTTGGGAGTTTTTCAAATTCCAAATGACGAAACCGCTGATGT
TGTCAAAAACGCAATTGTTAACGGATATCGTTTAATTGATACAGCTAAAATTTATGAAAATGAAGAAGGAACTGGTCAAG
GAATTAAAGAAGGTTTGGCTATGACAGGACTTTCTCGTGATGATCTTTTCATCACTTCAAAACTTTGGGGAGATAATCAT
TCTTATGAAGAAACAGTTCAAAACTTTGAAAAAAGTTTGAAAAAATTGGATTTAGATTATCTAGATTTATATCTTATCCA
CTGGCCAGGCACACATTATGCTTACAAAGAAGCTTGGAACGCAATGGAAGATTTATATAAAGCAGGCAAAATAAAAGCGA
TTGGTGTCAGTAACTTTCAAAAATCACATTTAGAAGAACTTCTTAGCTATGCTAAAATCACTCCCGTTTTAAATCAAATT
GAACTCCATCCAAAATTATCACAAGAAGAACTTCGTAATTTCTTAGAACTTCATGATATCAAGGTTCAAGCTTGGTCACC
TTTGATGCAAGGTCAATTATTAGACAATGAAGTCCTCAAAAAAATTGCTGATAAACATGGAAAATCTGTGGCTCAAATTA
TTCTTCGTTGGGATATTCAACAAGATATTTTAGTAAATGTAAAATCTATTAAAAGTGAACGAATGATAGCTAATCGTCAA
ATTTTTGATTTTTCACTTGACTCTGAAGATATGAAAGCTATCAACTCACTCAATGAAGAACTTCGTGTCGGTCCAGATCC
AGAACATTTTAATTTTTAA

Upstream 100 bases:

>100_bases
CTTTTTAGTATGTATGACACAAAAAAGTAGGTACTGTTCAAGAGGTTTTATTTATTATATACTAATTTTCTGCCAAAATA
AAATATATGAGGAGCAAAAA

Downstream 100 bases:

>100_bases
GAAAGAAGCATAATGAAAAAAATATCTCCCAGTCTCACTCTTCTAGCTCTAGCAATTAATGCTTTTGCTATCGGCTCAAC
CGAATTTATCAGTGTTGGTT

Product: oxidoreductase

Products: NA

Alternate protein names: GR; Methylglyoxal reductase [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKLNNQIEIPELGLGVFQIPNDETADVVKNAIVNGYRLIDTAKIYENEEGTGQGIKEGLAMTGLSRDDLFITSKLWGDNH
SYEETVQNFEKSLKKLDLDYLDLYLIHWPGTHYAYKEAWNAMEDLYKAGKIKAIGVSNFQKSHLEELLSYAKITPVLNQI
ELHPKLSQEELRNFLELHDIKVQAWSPLMQGQLLDNEVLKKIADKHGKSVAQIILRWDIQQDILVNVKSIKSERMIANRQ
IFDFSLDSEDMKAINSLNEELRVGPDPEHFNF

Sequences:

>Translated_272_residues
MKLNNQIEIPELGLGVFQIPNDETADVVKNAIVNGYRLIDTAKIYENEEGTGQGIKEGLAMTGLSRDDLFITSKLWGDNH
SYEETVQNFEKSLKKLDLDYLDLYLIHWPGTHYAYKEAWNAMEDLYKAGKIKAIGVSNFQKSHLEELLSYAKITPVLNQI
ELHPKLSQEELRNFLELHDIKVQAWSPLMQGQLLDNEVLKKIADKHGKSVAQIILRWDIQQDILVNVKSIKSERMIANRQ
IFDFSLDSEDMKAINSLNEELRVGPDPEHFNF
>Mature_272_residues
MKLNNQIEIPELGLGVFQIPNDETADVVKNAIVNGYRLIDTAKIYENEEGTGQGIKEGLAMTGLSRDDLFITSKLWGDNH
SYEETVQNFEKSLKKLDLDYLDLYLIHWPGTHYAYKEAWNAMEDLYKAGKIKAIGVSNFQKSHLEELLSYAKITPVLNQI
ELHPKLSQEELRNFLELHDIKVQAWSPLMQGQLLDNEVLKKIADKHGKSVAQIILRWDIQQDILVNVKSIKSERMIANRQ
IFDFSLDSEDMKAINSLNEELRVGPDPEHFNF

Specific function: Reduces glyoxal and methylglyoxal. Is not involved in the vitamin B6 biosynthesis [H]

COG id: COG0656

COG function: function code R; Aldo/keto reductases, related to diketogulonate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldo/keto reductase family [H]

Homologues:

Organism=Homo sapiens, GI223468663, Length=294, Percent_Identity=38.0952380952381, Blast_Score=199, Evalue=3e-51,
Organism=Homo sapiens, GI24497577, Length=292, Percent_Identity=35.958904109589, Blast_Score=193, Evalue=1e-49,
Organism=Homo sapiens, GI5174391, Length=292, Percent_Identity=35.958904109589, Blast_Score=193, Evalue=1e-49,
Organism=Homo sapiens, GI93277124, Length=304, Percent_Identity=37.5, Blast_Score=189, Evalue=2e-48,
Organism=Homo sapiens, GI310109922, Length=278, Percent_Identity=39.2086330935252, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI5174695, Length=298, Percent_Identity=37.5838926174497, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI5453543, Length=297, Percent_Identity=37.037037037037, Blast_Score=184, Evalue=6e-47,
Organism=Homo sapiens, GI310109920, Length=297, Percent_Identity=37.3737373737374, Blast_Score=184, Evalue=8e-47,
Organism=Homo sapiens, GI45446745, Length=297, Percent_Identity=37.3737373737374, Blast_Score=183, Evalue=1e-46,
Organism=Homo sapiens, GI4503285, Length=297, Percent_Identity=37.3737373737374, Blast_Score=183, Evalue=1e-46,
Organism=Homo sapiens, GI24497583, Length=296, Percent_Identity=37.1621621621622, Blast_Score=179, Evalue=2e-45,
Organism=Homo sapiens, GI291291012, Length=269, Percent_Identity=38.2899628252788, Blast_Score=173, Evalue=1e-43,
Organism=Homo sapiens, GI24497585, Length=297, Percent_Identity=36.7003367003367, Blast_Score=172, Evalue=3e-43,
Organism=Homo sapiens, GI4502049, Length=292, Percent_Identity=39.041095890411, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI300116273, Length=277, Percent_Identity=35.3790613718412, Blast_Score=162, Evalue=4e-40,
Organism=Homo sapiens, GI300116271, Length=277, Percent_Identity=34.6570397111913, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI310109924, Length=154, Percent_Identity=38.961038961039, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI310109926, Length=112, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI207028673, Length=112, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI87082198, Length=274, Percent_Identity=43.4306569343066, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1786400, Length=264, Percent_Identity=35.6060606060606, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1788081, Length=269, Percent_Identity=29.7397769516729, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788070, Length=221, Percent_Identity=27.1493212669683, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081735, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994888, Length=206, Percent_Identity=27.6699029126214, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561298, Length=271, Percent_Identity=34.3173431734317, Blast_Score=186, Evalue=8e-48,
Organism=Caenorhabditis elegans, GI17537075, Length=309, Percent_Identity=36.8932038834951, Blast_Score=185, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17537077, Length=294, Percent_Identity=36.734693877551, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI71998625, Length=267, Percent_Identity=37.8277153558052, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17564128, Length=298, Percent_Identity=34.5637583892617, Blast_Score=175, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17537079, Length=298, Percent_Identity=33.5570469798658, Blast_Score=175, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17538386, Length=274, Percent_Identity=35.7664233576642, Blast_Score=167, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17550248, Length=280, Percent_Identity=36.7857142857143, Blast_Score=161, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17552492, Length=273, Percent_Identity=32.2344322344322, Blast_Score=161, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17561300, Length=276, Percent_Identity=34.7826086956522, Blast_Score=158, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI17566692, Length=279, Percent_Identity=33.3333333333333, Blast_Score=153, Evalue=8e-38,
Organism=Caenorhabditis elegans, GI17562292, Length=276, Percent_Identity=33.3333333333333, Blast_Score=147, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17550246, Length=75, Percent_Identity=45.3333333333333, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324694, Length=291, Percent_Identity=37.1134020618557, Blast_Score=192, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6320576, Length=290, Percent_Identity=38.2758620689655, Blast_Score=182, Evalue=6e-47,
Organism=Saccharomyces cerevisiae, GI6321896, Length=312, Percent_Identity=35.2564102564103, Blast_Score=179, Evalue=3e-46,
Organism=Saccharomyces cerevisiae, GI6322556, Length=260, Percent_Identity=33.4615384615385, Blast_Score=157, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6319625, Length=299, Percent_Identity=34.4481605351171, Blast_Score=152, Evalue=8e-38,
Organism=Saccharomyces cerevisiae, GI6320079, Length=291, Percent_Identity=33.6769759450172, Blast_Score=134, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24662789, Length=292, Percent_Identity=36.3013698630137, Blast_Score=180, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24657054, Length=294, Percent_Identity=36.734693877551, Blast_Score=177, Evalue=8e-45,
Organism=Drosophila melanogaster, GI24663317, Length=293, Percent_Identity=34.4709897610922, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI21356425, Length=295, Percent_Identity=35.5932203389831, Blast_Score=170, Evalue=1e-42,
Organism=Drosophila melanogaster, GI20129731, Length=288, Percent_Identity=32.9861111111111, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24644950, Length=300, Percent_Identity=34.3333333333333, Blast_Score=165, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24662781, Length=294, Percent_Identity=38.0952380952381, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24662785, Length=287, Percent_Identity=38.6759581881533, Blast_Score=159, Evalue=2e-39,
Organism=Drosophila melanogaster, GI221378297, Length=320, Percent_Identity=31.875, Blast_Score=157, Evalue=6e-39,
Organism=Drosophila melanogaster, GI45553081, Length=290, Percent_Identity=32.4137931034483, Blast_Score=151, Evalue=6e-37,
Organism=Drosophila melanogaster, GI281366140, Length=256, Percent_Identity=32.03125, Blast_Score=130, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001395
- InterPro:   IPR018170
- InterPro:   IPR020471
- InterPro:   IPR023210 [H]

Pfam domain/function: PF00248 Aldo_ket_red [H]

EC number: =1.1.1.283 [H]

Molecular weight: Translated: 31241; Mature: 31241

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00062 ALDOKETO_REDUCTASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNNQIEIPELGLGVFQIPNDETADVVKNAIVNGYRLIDTAKIYENEEGTGQGIKEGLA
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHHHH
MTGLSRDDLFITSKLWGDNHSYEETVQNFEKSLKKLDLDYLDLYLIHWPGTHYAYKEAWN
HCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH
AMEDLYKAGKIKAIGVSNFQKSHLEELLSYAKITPVLNQIELHPKLSQEELRNFLELHDI
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KVQAWSPLMQGQLLDNEVLKKIADKHGKSVAQIILRWDIQQDILVNVKSIKSERMIANRQ
HHHHHCHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCE
IFDFSLDSEDMKAINSLNEELRVGPDPEHFNF
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKLNNQIEIPELGLGVFQIPNDETADVVKNAIVNGYRLIDTAKIYENEEGTGQGIKEGLA
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHHHH
MTGLSRDDLFITSKLWGDNHSYEETVQNFEKSLKKLDLDYLDLYLIHWPGTHYAYKEAWN
HCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH
AMEDLYKAGKIKAIGVSNFQKSHLEELLSYAKITPVLNQIELHPKLSQEELRNFLELHDI
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KVQAWSPLMQGQLLDNEVLKKIADKHGKSVAQIILRWDIQQDILVNVKSIKSERMIANRQ
HHHHHCHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCE
IFDFSLDSEDMKAINSLNEELRVGPDPEHFNF
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]