Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

Click here to switch to the map view.

The map label for this gene is ydbH

Identifier: 15672299

GI number: 15672299

Start: 316202

End: 316777

Strand: Reverse

Name: ydbH

Synonym: L116212

Alternate gene names: NA

Gene position: 316777-316202 (Counterclockwise)

Preceding gene: 15672314

Following gene: 15672298

Centisome position: 13.39

GC content: 39.06

Gene sequence:

>576_bases
TTGTGCGCATCAAAAAGGAGTTTTTTTATGTCTAATTCTAAGTTCAATGTCCGTTTATTAACGGAAATTGCCTTCATGGC
GGCACTCGCCTTCATCATCAGCCTTATTCCAAATACTGTTTATGGCTGGATTATTGTTGAAATCGCCTGTATCCCAATTC
TTATTCTCAGTTTTCGTCGCGGCCTAACAGCTGGACTTGTTGGTGGATTAATCTGGGGAATTCTGTCAATGATTACTGGA
CACGCTTATATTTTAACCTTGTCTCAAGCTTTTCTTGAATATCTCATCGCCCCTGTTTCACTTGGAATTGCTGGACTTTT
CCGCCAAAAAACAGCCTCTCTAAAACTTGTACCAGTTCTTTTGGGAACTTTTGTTGCTGTTCTTCTTAAATACTTCTTCC
ATTTTATTGCCGGAATCATTTTCTGGAGCCAATACGCTTGGAAAGGCTGGGGAGCCGTGGCTTATTCTCTTGCTGTCAAT
GGAATCAGTGCAATTTTGACTGCTATTGCTGCATTTGTCATTTTGATCATTTTCGTCAAAAAATTCCCTAAACTTTTCAT
TTATAGCAATTACTAA

Upstream 100 bases:

>100_bases
TTGACAAAACTGTCAGTAGCGAGAAATACCATCTGACCTGATCTGGGTAATGCCAGCGTAGGAATGTGTTAAGACAAATG
TCTAATTTCTAACCCTCCTT

Downstream 100 bases:

>100_bases
TAAAATCTGTCAGTAAAATTATTTTATCTTGTCAGTCAGCACAAATTCTTCTATAATAAAGCTATGTCTAAAAAGCAAAA
ATTAAAGAAAACACTTGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: Thiamine Transporter; Integral Membrane Protein; Proton-Coupled Thiamine Transporter

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITG
HAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVN
GISAILTAIAAFVILIIFVKKFPKLFIYSNY

Sequences:

>Translated_191_residues
MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITG
HAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVN
GISAILTAIAAFVILIIFVKKFPKLFIYSNY
>Mature_191_residues
MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITG
HAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVN
GISAILTAIAAFVILIIFVKKFPKLFIYSNY

Specific function: Unknown

COG id: COG3859

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21088; Mature: 21088

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRR
CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVL
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFPKLFIYSNY
HCCHHEEECCC
>Mature Secondary Structure
MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRR
CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVL
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFPKLFIYSNY
HCCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA