Click here to switch to the map view.

The map label for this gene is yddA

Identifier: 15672314

GI number: 15672314

Start: 331413

End: 332594

Strand: Reverse

Name: yddA

Synonym: L131423

Alternate gene names: 15672314

Gene position: 332594-331413 (Counterclockwise)

Preceding gene: 15672315

Following gene: 15672299

Centisome position: 14.06

GC content: 37.56

Gene sequence:

>1182_bases
ATGAAAAAAATATCTCCCAGTCTCACTCTTCTAGCTCTAGCAATTAATGCTTTTGCTATCGGCTCAACCGAATTTATCAG
TGTTGGTTTAATGCCAATGATTGTCAACACCTTTAATATTAGTTTATCTCAAGCGGGTTTAACCGTTTCTCTTTATGCTT
TAGGGGTAACGGTTGGTGCTCCCTTATTAACTATTCTTACAGGAACTTGGAATCGAAAAACTTTGATGGTTTCGATTATG
GGTCTCTTTATTCTTGGTAATTTACTGTCAGCTTTCGCTCCAACTTTCCTTTTACTTTTAGTAGGACGGGTTCTTGCCTC
ACTTGCTCATGGTATTTTCATGTCAATTTCCACAGTCATTGCCGCTGATGTTGTTCGACCTGAGAAAAGGGCCTCAGCAA
TCGCCCTCATGTTTACAGGATTAACCGTTGCTACTGTCATTGGTGTTCCTTTAGGGACTTTCATTGGTCAGCACTCTAAC
TGGCATATGTCATTTGTTTTCATTGTTGTTATTGGCTTAATTGGACTGATTGCTACTAGTATTCTTGTTCCAAAAGGGCT
TCCAATTCCCGGAAAAATTAATTTAAGTGGGCTTGCTAGAATTTTTACTAATAAATCAATTTTAATGTCTCTTTTTATCA
CCGCTTTTGGTTATGGAGGAACTTTCGCGGCTTATACTTATCTTACACCAATCCTTGAAGGAACTTTTAGATTTTCAGCA
AGTACAGTAGTGATTATTCTGGTTGCTTATGGTGTGATGGTTGCCATTGGTAATTCACTAGGTGGACATCTAGCAAATAA
AAATATCCTACCTGCCCTTCAAAAAATGTTTGCGGCTTTAGCTTTGAGTTTACTTTTTCTTTTTATCAGTGCAAGTTTAG
CTTCGCAAGCTTTGGGATTGATTGCAACTTTACTTTTGGGCTTGTTTGCCTTTATGAATGTCCCTGGTTTACAACTATAC
GTTGTTCAATTGGCAGAGAAATTTACGCCAAAAGATATTACTTTAGTTTCAGCTTTTAACATTGCAGCTTTCAATGTCGG
AATTACTTTAGGCTCATTTGTTGGAGGACAAATTTCTAAAGGCTCAAGTGTTGTCTTTACTCCACTTGGGGGAATCATTA
TCATTCTCCTTGCAATGTTCCTCATTCGTTTGGCTCAAAAAGACCAAGCAAGTAAATTATAA

Upstream 100 bases:

>100_bases
TTCACTTGACTCTGAAGATATGAAAGCTATCAACTCACTCAATGAAGAACTTCGTGTCGGTCCAGATCCAGAACATTTTA
ATTTTTAAGAAAGAAGCATA

Downstream 100 bases:

>100_bases
TAAGTTATAAAAATACTCTCTGAAAATTATTCAGAGAGTATTTATTTTAGCTATTGTTTAAAATTCATAGTTTTCAAAGT
AGACTTCAAGACTACGTTTA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVSIM
GLFILGNLLSAFAPTFLLLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSN
WHMSFVFIVVIGLIGLIATSILVPKGLPIPGKINLSGLARIFTNKSILMSLFITAFGYGGTFAAYTYLTPILEGTFRFSA
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISASLASQALGLIATLLLGLFAFMNVPGLQLY
VVQLAEKFTPKDITLVSAFNIAAFNVGITLGSFVGGQISKGSSVVFTPLGGIIIILLAMFLIRLAQKDQASKL

Sequences:

>Translated_393_residues
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVSIM
GLFILGNLLSAFAPTFLLLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSN
WHMSFVFIVVIGLIGLIATSILVPKGLPIPGKINLSGLARIFTNKSILMSLFITAFGYGGTFAAYTYLTPILEGTFRFSA
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISASLASQALGLIATLLLGLFAFMNVPGLQLY
VVQLAEKFTPKDITLVSAFNIAAFNVGITLGSFVGGQISKGSSVVFTPLGGIIIILLAMFLIRLAQKDQASKL
>Mature_393_residues
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVSIM
GLFILGNLLSAFAPTFLLLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSN
WHMSFVFIVVIGLIGLIATSILVPKGLPIPGKINLSGLARIFTNKSILMSLFITAFGYGGTFAAYTYLTPILEGTFRFSA
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISASLASQALGLIATLLLGLFAFMNVPGLQLY
VVQLAEKFTPKDITLVSAFNIAAFNVGITLGSFVGGQISKGSSVVFTPLGGIIIILLAMFLIRLAQKDQASKL

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=382, Percent_Identity=37.696335078534, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1786595, Length=361, Percent_Identity=27.4238227146814, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1787808, Length=358, Percent_Identity=30.1675977653631, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693198, Length=267, Percent_Identity=26.5917602996255, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41273; Mature: 41273

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHH
PLLTILTGTWNRKTLMVSIMGLFILGNLLSAFAPTFLLLLVGRVLASLAHGIFMSISTVI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSNWHMSFVFIVVIGLIGLIATS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ILVPKGLPIPGKINLSGLARIFTNKSILMSLFITAFGYGGTFAAYTYLTPILEGTFRFSA
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISASLASQALGL
HHHHHHHHHHHHHHHHCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IATLLLGLFAFMNVPGLQLYVVQLAEKFTPKDITLVSAFNIAAFNVGITLGSFVGGQISK
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHCCCCCCC
GSSVVFTPLGGIIIILLAMFLIRLAQKDQASKL
CCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHH
PLLTILTGTWNRKTLMVSIMGLFILGNLLSAFAPTFLLLLVGRVLASLAHGIFMSISTVI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSNWHMSFVFIVVIGLIGLIATS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ILVPKGLPIPGKINLSGLARIFTNKSILMSLFITAFGYGGTFAAYTYLTPILEGTFRFSA
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISASLASQALGL
HHHHHHHHHHHHHHHHCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IATLLLGLFAFMNVPGLQLYVVQLAEKFTPKDITLVSAFNIAAFNVGITLGSFVGGQISK
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHCCCCCCC
GSSVVFTPLGGIIIILLAMFLIRLAQKDQASKL
CCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]