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The map label for this gene is ydbF

Identifier: 15672298

GI number: 15672298

Start: 315662

End: 316138

Strand: Reverse

Name: ydbF

Synonym: L115671

Alternate gene names: 15672298

Gene position: 316138-315662 (Counterclockwise)

Preceding gene: 15672299

Following gene: 15672297

Centisome position: 13.36

GC content: 36.69

Gene sequence:

>477_bases
ATGTCTAAAAAGCAAAAATTAAAGAAAACACTTGTAGAACAAATTCTTGATAAAGCAAAAATTGAGCATACTGGACTTGC
AATTAACGCTTTAGAAAGTAATAGCCTCCCTGTGGATATCAGCCGCAGTGATATTTATAAAACCCTAGCACTAATCGGCG
ATAAAACTGGCCCTGTCATTGGTATTCTTCCACTGACAGAGCATTTGTCAGAAAAAAAATTGGCCAAAGTTTCGGGCAAT
AAAAAAGTAAGCATGATTCCTCAAAAAGACTTGCAAAAAACGACAGGTTATATTCACGGTGCAAATAATCCTGTGGGGAT
TTGGCAAAATAAAAAATTCCCAATTTTCATTGATTCTATTGCCTTAGAGCACGACTTTATCGTTTGTTCAGCTGGCGAAG
TTGGGCGTAGCATAAAAATCGCTCCTAAAGTCCTTGCTGACTTTGTTCATGCTCAATTTGTCGAAATTAGAGAATAA

Upstream 100 bases:

>100_bases
AAAATTCCCTAAACTTTTCATTTATAGCAATTACTAATAAAATCTGTCAGTAAAATTATTTTATCTTGTCAGTCAGCACA
AATTCTTCTATAATAAAGCT

Downstream 100 bases:

>100_bases
AATTACTGACAGAAATTCTGTCAGTAATTTTTTGTTTATTAAAGCAAGAGTTTGCAAAAATTCTTCTTTTTTAGTATATT
TTATTTTATACATAAAACAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPVDISRSDIYKTLALIGDKTGPVIGILPLTEHLSEKKLAKVSGN
KKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIFIDSIALEHDFIVCSAGEVGRSIKIAPKVLADFVHAQFVEIRE

Sequences:

>Translated_158_residues
MSKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPVDISRSDIYKTLALIGDKTGPVIGILPLTEHLSEKKLAKVSGN
KKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIFIDSIALEHDFIVCSAGEVGRSIKIAPKVLADFVHAQFVEIRE
>Mature_157_residues
SKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPVDISRSDIYKTLALIGDKTGPVIGILPLTEHLSEKKLAKVSGNK
KVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIFIDSIALEHDFIVCSAGEVGRSIKIAPKVLADFVHAQFVEIRE

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=114, Percent_Identity=37.719298245614, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17409; Mature: 17277

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPVDISRSDIYKTLALIGDKTGPVI
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECHHHHHHHHHHHCCCCCCEE
GILPLTEHLSEKKLAKVSGNKKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIFIDSI
EEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEECCCCCEECCCCCCCCEEEEEE
ALEHDFIVCSAGEVGRSIKIAPKVLADFVHAQFVEIRE
EEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKKQKLKKTLVEQILDKAKIEHTGLAINALESNSLPVDISRSDIYKTLALIGDKTGPVI
CHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECHHHHHHHHHHHCCCCCCEE
GILPLTEHLSEKKLAKVSGNKKVSMIPQKDLQKTTGYIHGANNPVGIWQNKKFPIFIDSI
EEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEECCCCCEECCCCCCCCEEEEEE
ALEHDFIVCSAGEVGRSIKIAPKVLADFVHAQFVEIRE
EEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]