| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13358163
GI number: 13358163
Start: 745536
End: 746753
Strand: Reverse
Name: Not Available
Synonym: UU598
Alternate gene names: 13358163
Gene position: 746753-745536 (Counterclockwise)
Preceding gene: 13358164
Following gene: 13358162
Centisome position: 99.34
GC content: 23.48
Gene sequence:
>1218_bases ATGGTAAAAAATTTTTTTATAAAAGATCCTATTCATGGTTTAATTACGTTTGATGAACAATATGAATGAGCTTATGAATT AATTAAAACAAAAGAGTTCTGGCGTTTAAATAATATAAAGCAATTAGGATCAAGTTGATCAATTTTCCCAAGTGCTACTC ATACACGTTTTACTCATTGTATTGGTGTTTTCCAAGTTACAAGAAAACTTTTAGATTCATTAAAATTCATTAAATCTGAT ACACACGATTTAATAAATAATAAAAAGATTGTTTGTGCTGCAGCCTTATTACATGATATTGGTCATGGTCCTTTTTCCCA TACTTTTGAATATGCAACAAATTATAATCATGAAAAAATTGGTCAAATGATTATTACTAATCCTAAAAGTGAAATTAATA AAATTTTAATTAAACATAATATCAATCCAGTTGATGTTGCTAATATAATTGATCATAAATCCAAAAAAATGTGAATGCAA CAGGTTATTTCATCTCAAATTGATGCAGATCGTTTAGATTATTTGCCACGTGATTCTCATTTTACAGGAACCAAGTATGG AAATATAGACTATGATAATATCTTTAAAAAGGCAATAGTTTTTAACGATCAATTATGTTTTTCAAAACACTCTTGAAACG CTTTAGAAAACATTTTAATTTCTCGTTGGAGTATGTTTGAAAATGTTTATTTAAATAAAACACCAACAACCTATGATATT TTAATGAAAAAGACTTTAGCAAGAGTGCATTTTTTATACCAAAAACAAAAAAAATATATATTCAAAAATTCACAATTATT AACAATTTTAAAACCATGATTAGATAATGAATCTTGAGATATTACTACTGTTCAAAATTTAGATGATTATTCATTTACAG CTTTAATGCGATCGTTTGCTAATGAACATGATTTTATTTTAAAAACTTTAGCAACAAATTGGTTACAAAATAAAGATTTT GTAACTTTTGAATATGAATATGGTAAAGATAAATCAAAAGATCAAAAGATTATTCATAAAAAATATTTTTATGAAACTAT TACTTCAAATAAACAAATTTATGATTTTAATGAACCGGTTTTTTTATATACAGAAAACAAAAATAATGATATTAAATTAT TAAAACTTGAAGATAAGAGTTTAATAATTGCTGCTTTAAAATCAATTAAACAACCACGAATAAAAAAATGAATTTTTTAC TATAAACCTTTAAAATAA
Upstream 100 bases:
>100_bases CGCATGGTCCAGAATTAGCTAAAACAATTTGTTATTTAGGACGCGAAAAAGTATTAAAAAATTTAATAAATATTTTAAAA ATTTTGGATTAATAATTATT
Downstream 100 bases:
>100_bases ATACTAATATATTAAATACAAAAAAACTAAAATATAAGGAGTTTAATATGAGCCGTCAATTAGTTGATATTGCTTATAAT GCAATAAAAAATAATAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MVKNFFIKDPIHGLITFDEQYEWAYELIKTKEFWRLNNIKQLGSSWSIFPSATHTRFTHCIGVFQVTRKLLDSLKFIKSD THDLINNKKIVCAAALLHDIGHGPFSHTFEYATNYNHEKIGQMIITNPKSEINKILIKHNINPVDVANIIDHKSKKMWMQ QVISSQIDADRLDYLPRDSHFTGTKYGNIDYDNIFKKAIVFNDQLCFSKHSWNALENILISRWSMFENVYLNKTPTTYDI LMKKTLARVHFLYQKQKKYIFKNSQLLTILKPWLDNESWDITTVQNLDDYSFTALMRSFANEHDFILKTLATNWLQNKDF VTFEYEYGKDKSKDQKIIHKKYFYETITSNKQIYDFNEPVFLYTENKNNDIKLLKLEDKSLIIAALKSIKQPRIKKWIFY YKPLK
Sequences:
>Translated_405_residues MVKNFFIKDPIHGLITFDEQYE*AYELIKTKEFWRLNNIKQLGSS*SIFPSATHTRFTHCIGVFQVTRKLLDSLKFIKSD THDLINNKKIVCAAALLHDIGHGPFSHTFEYATNYNHEKIGQMIITNPKSEINKILIKHNINPVDVANIIDHKSKKM*MQ QVISSQIDADRLDYLPRDSHFTGTKYGNIDYDNIFKKAIVFNDQLCFSKHS*NALENILISRWSMFENVYLNKTPTTYDI LMKKTLARVHFLYQKQKKYIFKNSQLLTILKP*LDNES*DITTVQNLDDYSFTALMRSFANEHDFILKTLATNWLQNKDF VTFEYEYGKDKSKDQKIIHKKYFYETITSNKQIYDFNEPVFLYTENKNNDIKLLKLEDKSLIIAALKSIKQPRIKK*IFY YKPLK >Mature_405_residues MVKNFFIKDPIHGLITFDEQYE*AYELIKTKEFWRLNNIKQLGSS*SIFPSATHTRFTHCIGVFQVTRKLLDSLKFIKSD THDLINNKKIVCAAALLHDIGHGPFSHTFEYATNYNHEKIGQMIITNPKSEINKILIKHNINPVDVANIIDHKSKKM*MQ QVISSQIDADRLDYLPRDSHFTGTKYGNIDYDNIFKKAIVFNDQLCFSKHS*NALENILISRWSMFENVYLNKTPTTYDI LMKKTLARVHFLYQKQKKYIFKNSQLLTILKP*LDNES*DITTVQNLDDYSFTALMRSFANEHDFILKTLATNWLQNKDF VTFEYEYGKDKSKDQKIIHKKYFYETITSNKQIYDFNEPVFLYTENKNNDIKLLKLEDKSLIIAALKSIKQPRIKK*IFY YKPLK
Specific function: Unknown
COG id: COG1078
COG function: function code R; HD superfamily phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38016914, Length=277, Percent_Identity=28.158844765343, Blast_Score=83, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17537827, Length=126, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17537829, Length=127, Percent_Identity=35.4330708661417, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24666702, Length=235, Percent_Identity=25.9574468085106, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46712; Mature: 46712
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKNFFIKDPIHGLITFDEQYEAYELIKTKEFWRLNNIKQLGSSSIFPSATHTRFTHCIG CCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH VFQVTRKLLDSLKFIKSDTHDLINNKKIVCAAALLHDIGHGPFSHTFEYATNYNHEKIGQ HHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCC MIITNPKSEINKILIKHNINPVDVANIIDHKSKKMMQQVISSQIDADRLDYLPRDSHFTG EEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCC TKYGNIDYDNIFKKAIVFNDQLCFSKHSNALENILISRWSMFENVYLNKTPTTYDILMKK CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHH TLARVHFLYQKQKKYIFKNSQLLTILKPLDNESDITTVQNLDDYSFTALMRSFANEHDFI HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHH LKTLATNWLQNKDFVTFEYEYGKDKSKDQKIIHKKYFYETITSNKQIYDFNEPVFLYTEN HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECC KNNDIKLLKLEDKSLIIAALKSIKQPRIKKIFYYKPLK CCCCEEEEEECCCHHHHHHHHHHCCCCHHEEEEECCCC >Mature Secondary Structure MVKNFFIKDPIHGLITFDEQYEAYELIKTKEFWRLNNIKQLGSSSIFPSATHTRFTHCIG CCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH VFQVTRKLLDSLKFIKSDTHDLINNKKIVCAAALLHDIGHGPFSHTFEYATNYNHEKIGQ HHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCC MIITNPKSEINKILIKHNINPVDVANIIDHKSKKMMQQVISSQIDADRLDYLPRDSHFTG EEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCC TKYGNIDYDNIFKKAIVFNDQLCFSKHSNALENILISRWSMFENVYLNKTPTTYDILMKK CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHH TLARVHFLYQKQKKYIFKNSQLLTILKPLDNESDITTVQNLDDYSFTALMRSFANEHDFI HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHH LKTLATNWLQNKDFVTFEYEYGKDKSKDQKIIHKKYFYETITSNKQIYDFNEPVFLYTEN HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECC KNNDIKLLKLEDKSLIIAALKSIKQPRIKKIFYYKPLK CCCCEEEEEECCCHHHHHHHHHHCCCCHHEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377; 7934828 [H]