| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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The map label for this gene is gltX
Identifier: 13358164
GI number: 13358164
Start: 746762
End: 748210
Strand: Reverse
Name: gltX
Synonym: UU599
Alternate gene names: 13358164
Gene position: 748210-746762 (Counterclockwise)
Preceding gene: 13358165
Following gene: 13358163
Centisome position: 99.53
GC content: 25.81
Gene sequence:
>1449_bases ATGAAAATTAGAACACGTTATGCTCCATCACCAACCGGTTATTTACATATTGGAGGAGCGCGAACAGCTTTATTTAATTA TTTACTAGCAAAAGCTTATGGTGGGGATTTTATTATTCGTATTGAAGATACTGATATTGAAAGAAATGTGGAAGGGGGAA TTAATTCCCAACTAGATTTTTTAGCATGAATGGGTATTATTCCAGACGAATCAATTCGTAATCCTAAAGCTTTTGGCCCA TATATCCAATCTGAAAAATTAAAACATTATGAAAAATTAGCATTAGATCTAGTTGATCAAAAAAAAGCTTATTTTTGTTT TTGTAGTAAAGAACAATTAGATGCAGATCGCGAATTAGCTGAAAAATCACATCAAACACCTAAATACAAACGGCACTGTT TAAATTTAGATAAAAAAACAATTGAAAGTAACTTATTACAAAATAAAGAATACACAATTCGTTTAAAAATTAATGAAAAT ATGGAATATAGCTGGGATGATTTAATTCGGGGTAAAATTAGTATTCCAGGTAGTGCTTTAACTGATCCTGTCATTTTAAA ATCAAATAAGATTGCAATGTATAATTTTGCAGTTGTAATTGACGATTATGAAATGCAAATTTCACATGTCATTCGTGGAG AAGAGCATATTTCTAATACACCTTATCAATTAGCGATTGCTCAGGCCTTAAATTATGATATAACAAAAATTAAATATGGT CATTTGTCAATTATTGTTGATGAGACAGGAAAAAAATTATCAAAGCGAAATTTATCTTTAAAACAGTTTGTGTCTGATTA TGAAAAAGATGGTTATTGGCCACATGCTATTACAAACTTTGTTGCATTATTAGGTTGAAGCCCAAAAAATAACGATGAAA TAATGAGTTTAGAAACGATGATTAAAAATTTTGATATCAATAATTTATCAAAATCCCCCGCCTTTTTTGATATCAATAAA ATGAATTGGTTTTCAACACAATATTTTAATAATATTACCCAAGAAGAATTTATCAATTTTATAAAGAAACATTCATTAAC TAAAGAATTAGTTTTGAATGATTATACTTTTATTAATAAATGTCTATTATTTAAATCTCATATTATTAATTTAAAACAAC TAATTGATTTAGTAATTGAACAATTTAATTGTGATAAAAAAGTATTAGCATCAGATGTAGATTATATTAAAAAAAACCAA TTAATAACTGTTGTTCGTGTTTTTTATGAACAATTAATAATTAATGATGAATTTAATGAAGAATTTATAAAAGAAATAAT TAAAAAAGTTCAAATAATAACTAATAACAAAGGTGCTAATTTATACATGCCAATTCGTATTGCAACTACATTTAGTTCGC ATGGTCCAGAATTAGCTAAAACAATTTGTTATTTAGGACGCGAAAAAGTATTAAAAAATTTAATAAATATTTTAAAAATT TTGGATTAA
Upstream 100 bases:
>100_bases TATAATGAATTATTATCCGATGGTTTTTATACAATTTTAAGTGGTGCAGGTAGTTCATTTATTCGCATAAAATTAAAAAA TAAGGAAGATTTAATTATTA
Downstream 100 bases:
>100_bases TAATTATTATGGTAAAAAATTTTTTTATAAAAGATCCTATTCATGGTTTAATTACGTTTGATGAACAATATGAATGAGCT TATGAATTAATTAAAACAAA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MKIRTRYAPSPTGYLHIGGARTALFNYLLAKAYGGDFIIRIEDTDIERNVEGGINSQLDFLAWMGIIPDESIRNPKAFGP YIQSEKLKHYEKLALDLVDQKKAYFCFCSKEQLDADRELAEKSHQTPKYKRHCLNLDKKTIESNLLQNKEYTIRLKINEN MEYSWDDLIRGKISIPGSALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNTPYQLAIAQALNYDITKIKYG HLSIIVDETGKKLSKRNLSLKQFVSDYEKDGYWPHAITNFVALLGWSPKNNDEIMSLETMIKNFDINNLSKSPAFFDINK MNWFSTQYFNNITQEEFINFIKKHSLTKELVLNDYTFINKCLLFKSHIINLKQLIDLVIEQFNCDKKVLASDVDYIKKNQ LITVVRVFYEQLIINDEFNEEFIKEIIKKVQIITNNKGANLYMPIRIATTFSSHGPELAKTICYLGREKVLKNLINILKI LD
Sequences:
>Translated_482_residues MKIRTRYAPSPTGYLHIGGARTALFNYLLAKAYGGDFIIRIEDTDIERNVEGGINSQLDFLA*MGIIPDESIRNPKAFGP YIQSEKLKHYEKLALDLVDQKKAYFCFCSKEQLDADRELAEKSHQTPKYKRHCLNLDKKTIESNLLQNKEYTIRLKINEN MEYSWDDLIRGKISIPGSALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNTPYQLAIAQALNYDITKIKYG HLSIIVDETGKKLSKRNLSLKQFVSDYEKDGYWPHAITNFVALLG*SPKNNDEIMSLETMIKNFDINNLSKSPAFFDINK MNWFSTQYFNNITQEEFINFIKKHSLTKELVLNDYTFINKCLLFKSHIINLKQLIDLVIEQFNCDKKVLASDVDYIKKNQ LITVVRVFYEQLIINDEFNEEFIKEIIKKVQIITNNKGANLYMPIRIATTFSSHGPELAKTICYLGREKVLKNLINILKI LD >Mature_482_residues MKIRTRYAPSPTGYLHIGGARTALFNYLLAKAYGGDFIIRIEDTDIERNVEGGINSQLDFLA*MGIIPDESIRNPKAFGP YIQSEKLKHYEKLALDLVDQKKAYFCFCSKEQLDADRELAEKSHQTPKYKRHCLNLDKKTIESNLLQNKEYTIRLKINEN MEYSWDDLIRGKISIPGSALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNTPYQLAIAQALNYDITKIKYG HLSIIVDETGKKLSKRNLSLKQFVSDYEKDGYWPHAITNFVALLG*SPKNNDEIMSLETMIKNFDINNLSKSPAFFDINK MNWFSTQYFNNITQEEFINFIKKHSLTKELVLNDYTFINKCLLFKSHIINLKQLIDLVIEQFNCDKKVLASDVDYIKKNQ LITVVRVFYEQLIINDEFNEEFIKEIIKKVQIITNNKGANLYMPIRIATTFSSHGPELAKTICYLGREKVLKNLINILKI LD
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=497, Percent_Identity=29.3762575452716, Blast_Score=233, Evalue=2e-61, Organism=Escherichia coli, GI1788743, Length=497, Percent_Identity=31.7907444668008, Blast_Score=255, Evalue=5e-69, Organism=Escherichia coli, GI226510925, Length=253, Percent_Identity=28.4584980237154, Blast_Score=92, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71993394, Length=333, Percent_Identity=41.4414414414414, Blast_Score=225, Evalue=4e-59, Organism=Saccharomyces cerevisiae, GI6324540, Length=342, Percent_Identity=36.8421052631579, Blast_Score=194, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6324742, Length=336, Percent_Identity=24.1071428571429, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24665321, Length=510, Percent_Identity=30.7843137254902, Blast_Score=211, Evalue=1e-54,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 55501; Mature: 55501
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRTRYAPSPTGYLHIGGARTALFNYLLAKAYGGDFIIRIEDTDIERNVEGGINSQLDF CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCE LAMGIIPDESIRNPKAFGPYIQSEKLKHYEKLALDLVDQKKAYFCFCSKEQLDADRELAE EEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHH KSHQTPKYKRHCLNLDKKTIESNLLQNKEYTIRLKINENMEYSWDDLIRGKISIPGSALT HHCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCEEECCCCCCC DPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNTPYQLAIAQALNYDITKIKYGH CCEEEECCEEEEEEEEEEEECHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCEEEEECE LSIIVDETGKKLSKRNLSLKQFVSDYEKDGYWPHAITNFVALLGSPKNNDEIMSLETMIK EEEEEECCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH NFDINNLSKSPAFFDINKMNWFSTQYFNNITQEEFINFIKKHSLTKELVLNDYTFINKCL HCCCCCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHCCHHHHHHHH LFKSHIINLKQLIDLVIEQFNCDKKVLASDVDYIKKNQLITVVRVFYEQLIINDEFNEEF HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHH IKEIIKKVQIITNNKGANLYMPIRIATTFSSHGPELAKTICYLGREKVLKNLINILKILD HHHHHHHHEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKIRTRYAPSPTGYLHIGGARTALFNYLLAKAYGGDFIIRIEDTDIERNVEGGINSQLDF CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCE LAMGIIPDESIRNPKAFGPYIQSEKLKHYEKLALDLVDQKKAYFCFCSKEQLDADRELAE EEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHH KSHQTPKYKRHCLNLDKKTIESNLLQNKEYTIRLKINENMEYSWDDLIRGKISIPGSALT HHCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHCCCEEECCCCCCC DPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNTPYQLAIAQALNYDITKIKYGH CCEEEECCEEEEEEEEEEEECHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCEEEEECE LSIIVDETGKKLSKRNLSLKQFVSDYEKDGYWPHAITNFVALLGSPKNNDEIMSLETMIK EEEEEECCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH NFDINNLSKSPAFFDINKMNWFSTQYFNNITQEEFINFIKKHSLTKELVLNDYTFINKCL HCCCCCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHCCHHHHHHHH LFKSHIINLKQLIDLVIEQFNCDKKVLASDVDYIKKNQLITVVRVFYEQLIINDEFNEEF HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHH IKEIIKKVQIITNNKGANLYMPIRIATTFSSHGPELAKTICYLGREKVLKNLINILKILD HHHHHHHHEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA