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The map label for this gene is rpoE

Identifier: 13358162

GI number: 13358162

Start: 745006

End: 745488

Strand: Reverse

Name: rpoE

Synonym: UU597

Alternate gene names: 13358162

Gene position: 745488-745006 (Counterclockwise)

Preceding gene: 13358163

Following gene: 13358161

Centisome position: 99.17

GC content: 25.26

Gene sequence:

>483_bases
ATGAGCCGTCAATTAGTTGATATTGCTTATAATGCAATAAAAAATAATAAAATTTATAACAAAAAACCATTTACTTTTGA
TGATATTATTAATGAAATTGTCAAGAATAGTAATGTAAATTTAGTAGAAGTTAATTCACAATTAGGTGTTTTATATACAA
CTTTAATACAAGATACACGTTTTATTTCAATTGGAGATTTAGAATGAAATTTACGTGAACGATTATCACTAGATGAAATT
ACAAAAATTAATAACGCTATGTATGAAGTTGGTTTATACAAAGATAGTGACCGTGAAGAAGATGAACATGAAATTGTTAA
AAATGATAAATTAACACAATCAAAAGAACAAGAGGAAAGTGATGAAGTAAGCTCTTTATCTGATTTTGTTGGCTACGAAG
ATGAAGATGAAGAATTTAAAAATAATAATACTTCTAATAAAGATGAAATAGAAGACGAAGAGGAATTAGAAGAGGAAGAA
TAA

Upstream 100 bases:

>100_bases
TTAAACAACCACGAATAAAAAAATGAATTTTTTACTATAAACCTTTAAAATAAATACTAATATATTAAATACAAAAAAAC
TAAAATATAAGGAGTTTAAT

Downstream 100 bases:

>100_bases
AAAAATGTCACCATTAGTTAATGCCAAAAAAATGATTCAAAATGCTTATGAAAATCATTATGCAGTGGCTGCAATTAATA
TCAATAATTTAGAATGAATT

Product: DNA-directed RNA polymerase subunit delta

Products: diphosphate; RNAn+1

Alternate protein names: RNAP delta factor [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSRQLVDIAYNAIKNNKIYNKKPFTFDDIINEIVKNSNVNLVEVNSQLGVLYTTLIQDTRFISIGDLEWNLRERLSLDEI
TKINNAMYEVGLYKDSDREEDEHEIVKNDKLTQSKEQEESDEVSSLSDFVGYEDEDEEFKNNNTSNKDEIEDEEELEEEE

Sequences:

>Translated_160_residues
MSRQLVDIAYNAIKNNKIYNKKPFTFDDIINEIVKNSNVNLVEVNSQLGVLYTTLIQDTRFISIGDLE*NLRERLSLDEI
TKINNAMYEVGLYKDSDREEDEHEIVKNDKLTQSKEQEESDEVSSLSDFVGYEDEDEEFKNNNTSNKDEIEDEEELEEEE
>Mature_159_residues
SRQLVDIAYNAIKNNKIYNKKPFTFDDIINEIVKNSNVNLVEVNSQLGVLYTTLIQDTRFISIGDLE*NLRERLSLDEIT
KINNAMYEVGLYKDSDREEDEHEIVKNDKLTQSKEQEESDEVSSLSDFVGYEDEDEEFKNNNTSNKDEIEDEEELEEEE

Specific function: Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis

COG id: COG3343

COG function: function code K; DNA-directed RNA polymerase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rpoE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007759 [H]

Pfam domain/function: PF05066 RNA_pol_delta [H]

EC number: 2.7.7.6

Molecular weight: Translated: 18566; Mature: 18435

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQLVDIAYNAIKNNKIYNKKPFTFDDIINEIVKNSNVNLVEVNSQLGVLYTTLIQDTR
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCC
FISIGDLENLRERLSLDEITKINNAMYEVGLYKDSDREEDEHEIVKNDKLTQSKEQEESD
EEEECCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH
EVSSLSDFVGYEDEDEEFKNNNTSNKDEIEDEEELEEEE
HHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
SRQLVDIAYNAIKNNKIYNKKPFTFDDIINEIVKNSNVNLVEVNSQLGVLYTTLIQDTR
CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCC
FISIGDLENLRERLSLDEITKINNAMYEVGLYKDSDREEDEHEIVKNDKLTQSKEQEESD
EEEECCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH
EVSSLSDFVGYEDEDEEFKNNNTSNKDEIEDEEELEEEE
HHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11048724 [H]