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The map label for this gene is yulF

Identifier: 16080169

GI number: 16080169

Start: 3196906

End: 3197892

Strand: Direct

Name: yulF

Synonym: BSU31170

Alternate gene names: 16080169

Gene position: 3196906-3197892 (Clockwise)

Preceding gene: 16080166

Following gene: 16080179

Centisome position: 75.84

GC content: 46.5

Gene sequence:

>987_bases
GTGATACGTTTTGCAATAATAGGAACCAACTGGATTACAGACCGCTTTCTTGAGTCAGCAGCGGATATCGAAGATTTTCA
GCTGACTGCTGTTTATTCAAGATCGGCTGAACGCGCTGGCGAGTTTGCTGCTAAACACAACGCTGCGCATGCCTTCTCAG
ACCTTCAGGAAATGGCGGCGAGCGATTGCTTTGATGCCGTATACATAGCGAGCCCGAACGCTCTTCACAAGGAACAAGCC
GTTCTCTTTATGAACCATGGCAAGCATGTGCTTTGTGAGAAGCCGTTTGCTTCGAATACAAAAGAAACAGAAGAGATGAT
CTCAGCGGCTAAGGCAAACGGCGTTGTTCTCATGGAAGCAATGAAGACCACTTTCCTGCCGAATTTCAAAGAACTGAAAA
AACACCTGCATAAAATCGGCACTGTCCGCAGATTTACCGCAAGCTACTGCCAGTATTCCTCACGATATGACGCGTTCAGA
AGCGGAACTGTTTTGAATGCGTTTCAGCCTGAGCTTTCCAATGGGTCATTAATGGATATTGGCGTCTATTGTATTTATCC
GGCTGTTGTGTTGTTTGGCGCGCCGAAGGATGTAAAAGCAAACGGATATGCTTTATCCTCCGGAGTGGACGGAGAAGGAA
CTGTCATTCTGTCTTACGACGGGTTCGAAGCTGTTCTGATGCATTCCAAAATCTCTACTTCCTATGCCCCGGCTGAAATC
CAGGGTGAAGACGGGACGATTGTAATCGATACGATTCACCGGCCTGAACGTGTTGAAATCCGCTACCGGGACGGCCGCCT
TGAAAACATCGCGATCCCTGATCCTAAACCGGCGATGTTCTATGAAGCAGAAGAATTTGTCACGCTTATAAAAGAGAATA
AGCTGGAATCTGAAGAAAATACATTTGAACGGTCTTTGACCACCGCAAAAATTATGGAAGAAGCAAGAAAGCAAATGGGG
ATTGTATACCCTGCTGATCAAGCTTAA

Upstream 100 bases:

>100_bases
GAAAAGCTTTCTCGGTTTTAACATTCTATTTATATCTATCATGTGATTTTGTTCTTTTTAAGCTATAATTTAGCTATATC
ATGCAAAAGGAGCGATACGA

Downstream 100 bases:

>100_bases
AAAAATCCGCCCGCGTGCAAATGCCGCGGCGGATTTTTTATTAGACAATCGGAGAAGATGCCTTCCTTTTTAAAAGCACC
TGTTGCTCATATTCTTTGAT

Product: biofilm formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MIRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAASDCFDAVYIASPNALHKEQA
VLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEAMKTTFLPNFKELKKHLHKIGTVRRFTASYCQYSSRYDAFR
SGTVLNAFQPELSNGSLMDIGVYCIYPAVVLFGAPKDVKANGYALSSGVDGEGTVILSYDGFEAVLMHSKISTSYAPAEI
QGEDGTIVIDTIHRPERVEIRYRDGRLENIAIPDPKPAMFYEAEEFVTLIKENKLESEENTFERSLTTAKIMEEARKQMG
IVYPADQA

Sequences:

>Translated_328_residues
MIRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAASDCFDAVYIASPNALHKEQA
VLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEAMKTTFLPNFKELKKHLHKIGTVRRFTASYCQYSSRYDAFR
SGTVLNAFQPELSNGSLMDIGVYCIYPAVVLFGAPKDVKANGYALSSGVDGEGTVILSYDGFEAVLMHSKISTSYAPAEI
QGEDGTIVIDTIHRPERVEIRYRDGRLENIAIPDPKPAMFYEAEEFVTLIKENKLESEENTFERSLTTAKIMEEARKQMG
IVYPADQA
>Mature_328_residues
MIRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAASDCFDAVYIASPNALHKEQA
VLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEAMKTTFLPNFKELKKHLHKIGTVRRFTASYCQYSSRYDAFR
SGTVLNAFQPELSNGSLMDIGVYCIYPAVVLFGAPKDVKANGYALSSGVDGEGTVILSYDGFEAVLMHSKISTSYAPAEI
QGEDGTIVIDTIHRPERVEIRYRDGRLENIAIPDPKPAMFYEAEEFVTLIKENKLESEENTFERSLTTAKIMEEARKQMG
IVYPADQA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family

Homologues:

Organism=Homo sapiens, GI7657212, Length=341, Percent_Identity=26.9794721407625, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI145693182, Length=326, Percent_Identity=47.239263803681, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI1787574, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082405, Length=134, Percent_Identity=27.6119402985075, Blast_Score=61, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24581117, Length=342, Percent_Identity=29.8245614035088, Blast_Score=141, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24584727, Length=333, Percent_Identity=25.2252252252252, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24581115, Length=337, Percent_Identity=26.4094955489614, Blast_Score=101, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YULF_BACSU (O05265)

Other databases:

- EMBL:   Z93938
- EMBL:   AL009126
- PIR:   H70014
- RefSeq:   NP_390995.1
- ProteinModelPortal:   O05265
- SMR:   O05265
- EnsemblBacteria:   EBBACT00000000751
- GeneID:   937153
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31170
- NMPDR:   fig|224308.1.peg.3120
- GenoList:   BSU31170
- GeneTree:   EBGT00070000032318
- HOGENOM:   HBG407231
- OMA:   QTGVVFP
- PhylomeDB:   O05265
- ProtClustDB:   CLSK887784
- BioCyc:   BSUB:BSU31170-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36516; Mature: 36516

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAA
CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SDCFDAVYIASPNALHKEQAVLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEA
HHCCCEEEEECCCCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEH
MKTTFLPNFKELKKHLHKIGTVRRFTASYCQYSSRYDAFRSGTVLNAFQPELSNGSLMDI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEH
GVYCIYPAVVLFGAPKDVKANGYALSSGVDGEGTVILSYDGFEAVLMHSKISTSYAPAEI
HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCEEEEHHHHCCCCCCCEE
QGEDGTIVIDTIHRPERVEIRYRDGRLENIAIPDPKPAMFYEAEEFVTLIKENKLESEEN
ECCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCEEECHHHHHHHHHHHCCCCHHH
TFERSLTTAKIMEEARKQMGIVYPADQA
HHHHHHHHHHHHHHHHHHCCEEECCCCC
>Mature Secondary Structure
MIRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAA
CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SDCFDAVYIASPNALHKEQAVLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEA
HHCCCEEEEECCCCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEH
MKTTFLPNFKELKKHLHKIGTVRRFTASYCQYSSRYDAFRSGTVLNAFQPELSNGSLMDI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEH
GVYCIYPAVVLFGAPKDVKANGYALSSGVDGEGTVILSYDGFEAVLMHSKISTSYAPAEI
HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCEEEEHHHHCCCCCCCEE
QGEDGTIVIDTIHRPERVEIRYRDGRLENIAIPDPKPAMFYEAEEFVTLIKENKLESEEN
ECCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCEEECHHHHHHHHHHHCCCCHHH
TFERSLTTAKIMEEARKQMGIVYPADQA
HHHHHHHHHHHHHHHHHHCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377