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The map label for this gene is yomD

Identifier: 16079199

GI number: 16079199

Start: 2262437

End: 2263261

Strand: Direct

Name: yomD

Synonym: BSU21400

Alternate gene names: 16079199

Gene position: 2262437-2263261 (Clockwise)

Preceding gene: 16079198

Following gene: 16079200

Centisome position: 53.67

GC content: 34.42

Gene sequence:

>825_bases
ATGGCAAGAAAGATATCAGATTATCATTTAAAAAAACGTGAAGAAACTCAAAAGAAATTTATTGATTTATTAGCTCAGAA
TAACTACATTCACATTTCTGGAGACATGGTAAATTCGAAAACAAAGGTGAAAGTCAGATGTCGACATAATCACACATGGC
AAGTAAACTACGAACACTTTAAAAAAGGTACTCGTTGTCCAGAATGCAGGATAATTGAAGGCTCCCTTAAAAAAAGGCTT
AACATAAGTACTGTGAAAAGTAGATATGCCCTTAAAGGCTATGAGATTTTAAGCACCTATAAAAACTGTCATTCTAAACT
AAAAGCTAAGTGCCCTGAAGGACATATATGGGAGCACCTTCCCAGCAACTTCTTTAAAGGTGAAGAGTGTTTTCAATGTA
AAGGTGCTAAAAAATACACTGTTGAATGTGCACAAGCAGCTTTTTCTGATCGTGGGTTTATCCCTTTATTCGATACATAC
CATCACAATAAAGAAAATCTCCCTTTTCTATGCAAGGAACATATAGACTTAGGAGTTCAATACGCTCCACTTCATAACAT
GGTAAGAGGTTTAGCAAACTGCAGAAAGTGTTATTTACTTCTTTTCACAGGCGAAAATAGCTCTAGATGGAAAGGCGGTA
TTTCTTCGTTAAATAAAACTTTAAGAGAAGCTGTTTATGAAGTTTGGACGAAGCCCTCATTAGAGAAATATTCATTTAAA
TGTGCAATAACAAACTCTACAAAAGACCTTCATGTGCACCACTATAAAAAGAATTTTAGCGAGATTGTTAAAGAAGCACT
GAGCAATTTAAGTTTTGAACTCTAA

Upstream 100 bases:

>100_bases
TGAAAAACAGAGATAACAAGAGCATACGTGAGATAAAGAGAGATTGGGTTTAGTCCCCTTCTCTCTTTTTTGTGCTCAAA
TTTAATTATTAGGTGGATAG

Downstream 100 bases:

>100_bases
AATTGGCGACTTTACTGTCAATGAGCTTGAGCAAATTAAAAATGAATGTGTAAGACTTCATTTAAATTATGGACTCGGAA
TCCCTCTAACTAAGAAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MARKISDYHLKKREETQKKFIDLLAQNNYIHISGDMVNSKTKVKVRCRHNHTWQVNYEHFKKGTRCPECRIIEGSLKKRL
NISTVKSRYALKGYEILSTYKNCHSKLKAKCPEGHIWEHLPSNFFKGEECFQCKGAKKYTVECAQAAFSDRGFIPLFDTY
HHNKENLPFLCKEHIDLGVQYAPLHNMVRGLANCRKCYLLLFTGENSSRWKGGISSLNKTLREAVYEVWTKPSLEKYSFK
CAITNSTKDLHVHHYKKNFSEIVKEALSNLSFEL

Sequences:

>Translated_274_residues
MARKISDYHLKKREETQKKFIDLLAQNNYIHISGDMVNSKTKVKVRCRHNHTWQVNYEHFKKGTRCPECRIIEGSLKKRL
NISTVKSRYALKGYEILSTYKNCHSKLKAKCPEGHIWEHLPSNFFKGEECFQCKGAKKYTVECAQAAFSDRGFIPLFDTY
HHNKENLPFLCKEHIDLGVQYAPLHNMVRGLANCRKCYLLLFTGENSSRWKGGISSLNKTLREAVYEVWTKPSLEKYSFK
CAITNSTKDLHVHHYKKNFSEIVKEALSNLSFEL
>Mature_273_residues
ARKISDYHLKKREETQKKFIDLLAQNNYIHISGDMVNSKTKVKVRCRHNHTWQVNYEHFKKGTRCPECRIIEGSLKKRLN
ISTVKSRYALKGYEILSTYKNCHSKLKAKCPEGHIWEHLPSNFFKGEECFQCKGAKKYTVECAQAAFSDRGFIPLFDTYH
HNKENLPFLCKEHIDLGVQYAPLHNMVRGLANCRKCYLLLFTGENSSRWKGGISSLNKTLREAVYEVWTKPSLEKYSFKC
AITNSTKDLHVHHYKKNFSEIVKEALSNLSFEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOMD_BACSU (O31981)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_390023.1
- ProteinModelPortal:   O31981
- EnsemblBacteria:   EBBACT00000000237
- GeneID:   939131
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21400
- NMPDR:   fig|224308.1.peg.2146
- GenoList:   BSU21400
- GeneTree:   EBGT00070000035596
- OMA:   PLCARID
- BioCyc:   BSUB:BSU21400-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31975; Mature: 31844

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKISDYHLKKREETQKKFIDLLAQNNYIHISGDMVNSKTKVKVRCRHNHTWQVNYEHF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCEECCCEEEEEEEECCCEEEECHHHH
KKGTRCPECRIIEGSLKKRLNISTVKSRYALKGYEILSTYKNCHSKLKAKCPEGHIWEHL
HCCCCCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
PSNFFKGEECFQCKGAKKYTVECAQAAFSDRGFIPLFDTYHHNKENLPFLCKEHIDLGVQ
CHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEHHCCCCCCCCCCHHHHHHHCCCCE
YAPLHNMVRGLANCRKCYLLLFTGENSSRWKGGISSLNKTLREAVYEVWTKPSLEKYSFK
ECCHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
CAITNSTKDLHVHHYKKNFSEIVKEALSNLSFEL
EEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ARKISDYHLKKREETQKKFIDLLAQNNYIHISGDMVNSKTKVKVRCRHNHTWQVNYEHF
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCEECCCEEEEEEEECCCEEEECHHHH
KKGTRCPECRIIEGSLKKRLNISTVKSRYALKGYEILSTYKNCHSKLKAKCPEGHIWEHL
HCCCCCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
PSNFFKGEECFQCKGAKKYTVECAQAAFSDRGFIPLFDTYHHNKENLPFLCKEHIDLGVQ
CHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEHHCCCCCCCCCCHHHHHHHCCCCE
YAPLHNMVRGLANCRKCYLLLFTGENSSRWKGGISSLNKTLREAVYEVWTKPSLEKYSFK
ECCHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
CAITNSTKDLHVHHYKKNFSEIVKEALSNLSFEL
EEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377