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The map label for this gene is yomE

Identifier: 16079198

GI number: 16079198

Start: 2260333

End: 2262267

Strand: Direct

Name: yomE

Synonym: BSU21390

Alternate gene names: 16079198

Gene position: 2260333-2262267 (Clockwise)

Preceding gene: 16079197

Following gene: 16079199

Centisome position: 53.62

GC content: 37.0

Gene sequence:

>1935_bases
ATGGCTGGTTTTTATAGATATGATCAAAATTTAGATAAATATGTTCCGATGCCTGTTGAACTACTAGCTTCAGAAGGAGA
AGAATACACCGCTCCTAAGATTACTCAGAAGTTTAATGAAGTAGAAACGAAAACAACAGAAATTTTAAACAAGGTATTAA
CTGATGACAGATATTTTACAGTAACAAGTTCTTTTAAACAGGATGCCACACTTGGTATTGAGTACTATGTTACAAAGGTT
ACTCCTAAAACAACCGAAGCTAAAAAAAGTATGGTGCAAAAAACGTTTGCATATGACTTTGAAAAATCCATTGATCCCAC
ATCTTCTTATTTTGGTACAACAAATCGTGAAACAGTTTTAAGTATGGCAAAACGAAAAAGATCTGTTGTTGCAATAAACG
CTAGTGGTTGGCGATCAAATGGTGAAGTCATGGGGCTTCAAATTAAAGACGGAGTTCTCTACAAAGATTATGACGCTGCT
GGATACACAGGCGCTGAGGCTTGTGTATTTTTTGATGATGGAACTATGAAGGTTTACGGAAACAGAGAAGTTGATGCCGA
CATCCTAATTTCTAAAGGCGCACGAAACTCTTTTGCTTTTGGCATTTGGCTAGTTAAAGATTCTAAGCCAAGAACGGCTC
AAATGACTACATGGGCAGATTTAAATGTTAAGCATCCTCGACAAGCCATTGGGCAAAGATCTGATGGTACACTAGTTATC
ATTACTGTAGATGGCCGCTCACTTCGATCCAGTGGTATTACAGCTTATGATATGCCATCTTTATTTTTATCTGAAGGCTG
TATTAATGCATTTCTTTTAGATGGTGGTGGAAGCTCTCAAACTGCTGTTGAAGGAAAATATATTAATAACATTAGTGATG
GCATTGAACGTGCAGTGGTCGATACCTTAACAATTTCATATCCTGATGACGATACAGATAGCAGATTTTTTGAAGTTCAA
GAAGGAAGAGGTTTGGCAACAAGTCTAAACAGACGTGTAGAGTTTATTGAATCCAAGCCTACTTGGAATGTATTAGATTT
AGGCTTCTCACCAGATGGCTTAATCGATAATACAGCTAAGTTTAAAAAAGCCCTTAGTGATTTATCTGAAAAAGGTGGAG
GGAAACTACATTTTCCGAAAGGTACATATTTAATCGGTAAGCAGAATACAACTAGCGCTAGTGAAAAAATTGAACTCCCT
TCAAATGTCTCAATTGTTGGTGAAAGACGATCCTACACTAAACTCCTTCGAAATCCAAATCACTCACTTGATGAATTGTT
GCGAATCACAGATCACAATTATATAGAAGGCATTGAAATTGATGGCAATAGCAGTGTAAATAAGAGTAGCTGCCGATTGA
TCGCAGGTGGAAATATAAAATCATTTAAAATGAAAGACTGCAGCTTGGTTAATGCTACAGACCGAGGAGTGAGTATTCAC
GGGATCGGCAAGTCTATAACGATTGAAGGAATGTATATTTCCAATATAGCCAACGAGTGCATCAACGTTGCTGAAGGAGA
AATTATTAAACTAATTGACTCTGAGATCACATTTAGCGGTACTGCCCTTTGGGTGGGTAATGCTGCAAATATCTTCACTA
AGAATAACCTCGCAAAATCCTTAAAAACCTTCGTCCGGTACAAAAACTCTCAAAATGCAATTTGTTCAGGAAACATTATC
ACTAATAATATTGATCGCGCAATTTGGGGATCTGTAAGAGAAGCTGTTTTCTCTGATAATGTTTTCAAGCAATGCCACTC
TGATTATCACCTTTACTTTATTCAAGAAGACACTGGAACAAACGATTTAATTGTAACTGGAAACTCAGTTTATAGTGATG
TTGAAGGAACAGCTTTCATTAGAACTCCATCAGATATAGACAGAAGACGAGTGTCGGGTAACGTAGGTAATATACCTAGC
TTGAACTTGGATTAA

Upstream 100 bases:

>100_bases
AAAACGAGTTGTTGTTTCAGATACAGCACCAGATTCAGGACAAGTATGGTACAAAACTGACTAAGATCCCCTCCGGGATC
TTTTTTATTGGAGGAAAGTT

Downstream 100 bases:

>100_bases
GAATAAAGGAACAATAAAGGTGGTGGTTACGTTCTAGATAAAATATAGATTTTATTCAAAATACATACTTGAAAAACAGA
GATAACAAGAGCATACGTGA

Product: glycosyl hydrolase; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 644; Mature: 643

Protein sequence:

>644_residues
MAGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFTVTSSFKQDATLGIEYYVTKV
TPKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVLSMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAA
GYTGAEACVFFDDGTMKVYGNREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVI
ITVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVVDTLTISYPDDDTDSRFFEVQ
EGRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAKFKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELP
SNVSIVGERRSYTKLLRNPNHSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIH
GIGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKSLKTFVRYKNSQNAICSGNII
TNNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGTNDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPS
LNLD

Sequences:

>Translated_644_residues
MAGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFTVTSSFKQDATLGIEYYVTKV
TPKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVLSMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAA
GYTGAEACVFFDDGTMKVYGNREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVI
ITVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVVDTLTISYPDDDTDSRFFEVQ
EGRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAKFKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELP
SNVSIVGERRSYTKLLRNPNHSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIH
GIGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKSLKTFVRYKNSQNAICSGNII
TNNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGTNDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPS
LNLD
>Mature_643_residues
AGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFTVTSSFKQDATLGIEYYVTKVT
PKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVLSMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAAG
YTGAEACVFFDDGTMKVYGNREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVII
TVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVVDTLTISYPDDDTDSRFFEVQE
GRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAKFKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELPS
NVSIVGERRSYTKLLRNPNHSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIHG
IGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKSLKTFVRYKNSQNAICSGNIIT
NNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGTNDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPSL
NLD

Specific function: Unknown

COG id: COG4632

COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOME_BACSU (O31980)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_390022.1
- ProteinModelPortal:   O31980
- SMR:   O31980
- EnsemblBacteria:   EBBACT00000003408
- GeneID:   939136
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21390
- NMPDR:   fig|224308.1.peg.2145
- GenoList:   BSU21390
- GeneTree:   EBGT00050000005776
- BioCyc:   BSUB:BSU21390-MONOMER
- InterPro:   IPR018711
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10

Pfam domain/function: PF09992 DUF2233; SSF51126 Pectin_lyas_like

EC number: NA

Molecular weight: Translated: 71099; Mature: 70967

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFT
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VTSSFKQDATLGIEYYVTKVTPKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVL
EECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHH
SMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAAGYTGAEACVFFDDGTMKVYG
HHHHCCCEEEEEECCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEEEEECCEEEEEE
NREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVI
CCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHCCCCCCEEEE
ITVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVV
EEECCCCHHHCCCEEECCCHHHHHCCCEEEEEEECCCCCCEEECCHHHHHHHHHHHHHEE
DTLTISYPDDDTDSRFFEVQEGRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAK
EEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCHHH
FKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELPSNVSIVGERRSYTKLLRNPN
HHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCEEECCCCCEEEECCHHHHHHHCCCC
HSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIH
CCHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCEEEECCCCCEEEE
GIGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKS
ECCCEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCEEECCEEEEECCCCCEEECHHHHHH
LKTFVRYKNSQNAICSGNIITNNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGT
HHHHHHCCCCCCCEEECCEEECCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEEEECCCCC
NDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPSLNLD
CCEEEECCHHCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGFYRYDQNLDKYVPMPVELLASEGEEYTAPKITQKFNEVETKTTEILNKVLTDDRYFT
CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VTSSFKQDATLGIEYYVTKVTPKTTEAKKSMVQKTFAYDFEKSIDPTSSYFGTTNRETVL
EECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHH
SMAKRKRSVVAINASGWRSNGEVMGLQIKDGVLYKDYDAAGYTGAEACVFFDDGTMKVYG
HHHHCCCEEEEEECCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEEEEECCEEEEEE
NREVDADILISKGARNSFAFGIWLVKDSKPRTAQMTTWADLNVKHPRQAIGQRSDGTLVI
CCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHCCCCCCEEEE
ITVDGRSLRSSGITAYDMPSLFLSEGCINAFLLDGGGSSQTAVEGKYINNISDGIERAVV
EEECCCCHHHCCCEEECCCHHHHHCCCEEEEEEECCCCCCEEECCHHHHHHHHHHHHHEE
DTLTISYPDDDTDSRFFEVQEGRGLATSLNRRVEFIESKPTWNVLDLGFSPDGLIDNTAK
EEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCHHH
FKKALSDLSEKGGGKLHFPKGTYLIGKQNTTSASEKIELPSNVSIVGERRSYTKLLRNPN
HHHHHHHHHHCCCCEEECCCCCEEEECCCCCCCCCEEECCCCCEEEECCHHHHHHHCCCC
HSLDELLRITDHNYIEGIEIDGNSSVNKSSCRLIAGGNIKSFKMKDCSLVNATDRGVSIH
CCHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCEEEECCCCCEEEE
GIGKSITIEGMYISNIANECINVAEGEIIKLIDSEITFSGTALWVGNAANIFTKNNLAKS
ECCCEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCEEECCEEEEECCCCCEEECHHHHHH
LKTFVRYKNSQNAICSGNIITNNIDRAIWGSVREAVFSDNVFKQCHSDYHLYFIQEDTGT
HHHHHHCCCCCCCEEECCEEECCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEEEECCCCC
NDLIVTGNSVYSDVEGTAFIRTPSDIDRRRVSGNVGNIPSLNLD
CCEEEECCHHCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377