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Identifier: 16519952

GI number: 16519952

Start: 186270

End: 186986

Strand: Reverse

Name: Not Available

Synonym: NGR_a01530

Alternate gene names: 16519952

Gene position: 186986-186270 (Counterclockwise)

Preceding gene: 16519951

Following gene: 16519953

Centisome position: 34.87

GC content: 53.14

Gene sequence:

>717_bases
GTGCGAACGCGCCGCGTCTACCTTCCACTTAAAGGCGAGCTATCAATGGATTGGCACGACTACCTCGGACCGTTGGGTCG
TGGCGCCTGGGTCACGATCCAATTCACTCTTTACTCTATGTTCTTTGGGGCTGTCTGCTCTTTCGCGTTCGGGATTGGAA
AGCTTTCCAAGAACCCGTTCGTCAAAGGCTTTTCAATCCTCTACATTGAGATCTTCCGCGGAACATCTCTATTGGTCCAG
TTGTTCTGGCTCTTTTTCGCCCTGCCGATCGCCGGGGACATGATGGGCATCGATCTGCGACTTTCTCCCGTAGTGGCTGG
CGTTCTCGCTCTTAGCCTTAACCTGGGGGCTTATGGTGCGGAAATCGTTCGAGGGGCAATTCAGGCGGTCAGTCCTAGTC
AATATGAGGCAGCAACGGCGTTGAACTTCAGCTCGTCACAAGCTCTCTGGCGCGTGGCGTTACCGCAAGCGATCCCGGAG
ATGATGCCGAGTTTCTCCAATCTCGCGATCGCCGCTTTGAAAGATACCTCACTGGTATCGCTCATTACATTGCATGACTT
GACTTTCGCCGCGGAGCAACTGCGCAATTTCTACCAAGATAGCACGACCGTATATACAATGGTCCTTCTTATGTATTTCG
GGATAGCACTCGTACTGTCTTTCTTCATGCGCCTCATAGAATCGTCGGTAACCCGCTGGCGCGGACATCGGAGGTAG

Upstream 100 bases:

>100_bases
GATCGCGGCGATACCCGACAAGACGACCAAAGAGTTATGCTCGAATTGAGGCAGCAAGAACGATTGAACGTCGACCGAAA
CATCCGTCGACGTCTCTCCG

Downstream 100 bases:

>100_bases
AAATGCTCTACGGTTTTACATGGGATACCGGCAACGGAGAGTTAGCATTCGCTATTTCCATTTTGCCAATGCTTTTGATG
GGATTGATAACCACTCTCCA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRTRRVYLPLKGELSMDWHDYLGPLGRGAWVTIQFTLYSMFFGAVCSFAFGIGKLSKNPFVKGFSILYIEIFRGTSLLVQ
LFWLFFALPIAGDMMGIDLRLSPVVAGVLALSLNLGAYGAEIVRGAIQAVSPSQYEAATALNFSSSQALWRVALPQAIPE
MMPSFSNLAIAALKDTSLVSLITLHDLTFAAEQLRNFYQDSTTVYTMVLLMYFGIALVLSFFMRLIESSVTRWRGHRR

Sequences:

>Translated_238_residues
MRTRRVYLPLKGELSMDWHDYLGPLGRGAWVTIQFTLYSMFFGAVCSFAFGIGKLSKNPFVKGFSILYIEIFRGTSLLVQ
LFWLFFALPIAGDMMGIDLRLSPVVAGVLALSLNLGAYGAEIVRGAIQAVSPSQYEAATALNFSSSQALWRVALPQAIPE
MMPSFSNLAIAALKDTSLVSLITLHDLTFAAEQLRNFYQDSTTVYTMVLLMYFGIALVLSFFMRLIESSVTRWRGHRR
>Mature_238_residues
MRTRRVYLPLKGELSMDWHDYLGPLGRGAWVTIQFTLYSMFFGAVCSFAFGIGKLSKNPFVKGFSILYIEIFRGTSLLVQ
LFWLFFALPIAGDMMGIDLRLSPVVAGVLALSLNLGAYGAEIVRGAIQAVSPSQYEAATALNFSSSQALWRVALPQAIPE
MMPSFSNLAIAALKDTSLVSLITLHDLTFAAEQLRNFYQDSTTVYTMVLLMYFGIALVLSFFMRLIESSVTRWRGHRR

Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1788226, Length=213, Percent_Identity=34.7417840375587, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787030, Length=201, Percent_Identity=32.3383084577114, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787087, Length=148, Percent_Identity=33.7837837837838, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788646, Length=179, Percent_Identity=31.8435754189944, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=32.2115384615385, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788645, Length=231, Percent_Identity=29.8701298701299, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=237, Percent_Identity=27.8481012658228, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787086, Length=212, Percent_Identity=29.2452830188679, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786873, Length=211, Percent_Identity=28.436018957346, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4TF_RHISN (P55660)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444072.1
- ProteinModelPortal:   P55660
- GeneID:   962308
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01530
- HOGENOM:   HBG704821
- ProtClustDB:   CLSK881658
- InterPro:   IPR010065
- InterPro:   IPR000515
- InterPro:   IPR014342
- TIGRFAMs:   TIGR03004
- TIGRFAMs:   TIGR01726

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 26565; Mature: 26565

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xaddd9c0)-; HASH(0xae10538)-; HASH(0xba1e61c)-; HASH(0xc1c5208)-; HASH(0x9638570)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRRVYLPLKGELSMDWHDYLGPLGRGAWVTIQFTLYSMFFGAVCSFAFGIGKLSKNPF
CCCCEEEEEECCCCCCCHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKGFSILYIEIFRGTSLLVQLFWLFFALPIAGDMMGIDLRLSPVVAGVLALSLNLGAYGA
CCCHHEEEEEECCCHHHHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHHHHHHCCCHHHH
EIVRGAIQAVSPSQYEAATALNFSSSQALWRVALPQAIPEMMPSFSNLAIAALKDTSLVS
HHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHEEEEECCCHHHH
LITLHDLTFAAEQLRNFYQDSTTVYTMVLLMYFGIALVLSFFMRLIESSVTRWRGHRR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MRTRRVYLPLKGELSMDWHDYLGPLGRGAWVTIQFTLYSMFFGAVCSFAFGIGKLSKNPF
CCCCEEEEEECCCCCCCHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKGFSILYIEIFRGTSLLVQLFWLFFALPIAGDMMGIDLRLSPVVAGVLALSLNLGAYGA
CCCHHEEEEEECCCHHHHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHHHHHHCCCHHHH
EIVRGAIQAVSPSQYEAATALNFSSSQALWRVALPQAIPEMMPSFSNLAIAALKDTSLVS
HHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHEEEEECCCHHHH
LITLHDLTFAAEQLRNFYQDSTTVYTMVLLMYFGIALVLSFFMRLIESSVTRWRGHRR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424