Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519953

GI number: 16519953

Start: 185572

End: 186267

Strand: Reverse

Name: Not Available

Synonym: NGR_a01520

Alternate gene names: 16519953

Gene position: 186267-185572 (Counterclockwise)

Preceding gene: 16519952

Following gene: 16519954

Centisome position: 34.74

GC content: 51.29

Gene sequence:

>696_bases
ATGCTCTACGGTTTTACATGGGATACCGGCAACGGAGAGTTAGCATTCGCTATTTCCATTTTGCCAATGCTTTTGATGGG
ATTGATAACCACTCTCCAGGCGGCCTTTCTGGGCTTCTTCGTCGCATGCGTCCTAGGAATGGTGTTCGCGGTTTTACGGG
GGATGCGTACGAGATGGGTAGCCTGGCCGGCCGCTGTCCTAATCGAGTTCATAAGGGACACGCCATTAATCGCCCAATTG
TTCTTCTTGTACTATGTACTTCCTGAGTATGGAATAATATTCCCTGCCTTTTTGACCGGAGCCTTGGCCCTTGGCATCCA
GTATAGCGCGTATATTTCCGAAGTTTATCGGGGCGGAATACAGGCTGTTGACCACGGGCAGCGGGAAGCGGCCAAGTCGC
TTGATCTTCCTCCTGCGCGCACGTTTACGCACGTGATCCTTCCGCAGGCCATTCCTCGTGTCATACCCGCTCTCGGAAAT
TATCTCGTCTCTATTATGAAGGACGTTCCCGTTCTTTCGGTCGTTACAATTGTTGAGATGCTAAACGCGGCTAAGATCAT
CGGAGACCAGACTTTCAATTATCTCGTGCCGCTTTCTATGGTTGGTGGCATCTACCTTATCCTAACAATCGTTGCCTCGG
CGCTCGTTCGGATCGTCGACGTCAACCTTCCCAAAAGAGGGGTTCCCCTGAGATGA

Upstream 100 bases:

>100_bases
TGGTCCTTCTTATGTATTTCGGGATAGCACTCGTACTGTCTTTCTTCATGCGCCTCATAGAATCGTCGGTAACCCGCTGG
CGCGGACATCGGAGGTAGAA

Downstream 100 bases:

>100_bases
GTGACTCCATCATCGTTTTCGACAAGGTAAAAAAGGCCTACGGCAATTTCACCGTGATCAACGAACTCGATTTCGAGGTT
CGACGTGGGGAAAAAGTATC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWVAWPAAVLIEFIRDTPLIAQL
FFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGIQAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGN
YLVSIMKDVPVLSVVTIVEMLNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR

Sequences:

>Translated_231_residues
MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWVAWPAAVLIEFIRDTPLIAQL
FFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGIQAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGN
YLVSIMKDVPVLSVVTIVEMLNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR
>Mature_231_residues
MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWVAWPAAVLIEFIRDTPLIAQL
FFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGIQAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGN
YLVSIMKDVPVLSVVTIVEMLNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR

Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1788226, Length=209, Percent_Identity=33.9712918660287, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=32.512315270936, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=24.6575342465753, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=24.7619047619048, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994930, Length=210, Percent_Identity=30.952380952381, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=26.3392857142857, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786874, Length=178, Percent_Identity=26.9662921348315, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI87082239, Length=162, Percent_Identity=33.9506172839506, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788645, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788646, Length=227, Percent_Identity=23.3480176211454, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4TG_RHISN (P55661)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444073.1
- ProteinModelPortal:   P55661
- GeneID:   962445
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01520
- HOGENOM:   HBG704821
- ProtClustDB:   CLSK881659
- InterPro:   IPR010065
- InterPro:   IPR000515
- InterPro:   IPR014341
- TIGRFAMs:   TIGR03003
- TIGRFAMs:   TIGR01726

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 25320; Mature: 25320

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xaf877ac)-; HASH(0xbf11848)-; HASH(0xaddea48)-; HASH(0xbd35b64)-; HASH(0xb76c230)-; HASH(0xb927058)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWV
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWPAAVLIEFIRDTPLIAQLFFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGNYLVSIMKDVPVLSVVTIVEM
HHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure
MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWV
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWPAAVLIEFIRDTPLIAQLFFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGNYLVSIMKDVPVLSVVTIVEM
HHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424