Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519953
GI number: 16519953
Start: 185572
End: 186267
Strand: Reverse
Name: Not Available
Synonym: NGR_a01520
Alternate gene names: 16519953
Gene position: 186267-185572 (Counterclockwise)
Preceding gene: 16519952
Following gene: 16519954
Centisome position: 34.74
GC content: 51.29
Gene sequence:
>696_bases ATGCTCTACGGTTTTACATGGGATACCGGCAACGGAGAGTTAGCATTCGCTATTTCCATTTTGCCAATGCTTTTGATGGG ATTGATAACCACTCTCCAGGCGGCCTTTCTGGGCTTCTTCGTCGCATGCGTCCTAGGAATGGTGTTCGCGGTTTTACGGG GGATGCGTACGAGATGGGTAGCCTGGCCGGCCGCTGTCCTAATCGAGTTCATAAGGGACACGCCATTAATCGCCCAATTG TTCTTCTTGTACTATGTACTTCCTGAGTATGGAATAATATTCCCTGCCTTTTTGACCGGAGCCTTGGCCCTTGGCATCCA GTATAGCGCGTATATTTCCGAAGTTTATCGGGGCGGAATACAGGCTGTTGACCACGGGCAGCGGGAAGCGGCCAAGTCGC TTGATCTTCCTCCTGCGCGCACGTTTACGCACGTGATCCTTCCGCAGGCCATTCCTCGTGTCATACCCGCTCTCGGAAAT TATCTCGTCTCTATTATGAAGGACGTTCCCGTTCTTTCGGTCGTTACAATTGTTGAGATGCTAAACGCGGCTAAGATCAT CGGAGACCAGACTTTCAATTATCTCGTGCCGCTTTCTATGGTTGGTGGCATCTACCTTATCCTAACAATCGTTGCCTCGG CGCTCGTTCGGATCGTCGACGTCAACCTTCCCAAAAGAGGGGTTCCCCTGAGATGA
Upstream 100 bases:
>100_bases TGGTCCTTCTTATGTATTTCGGGATAGCACTCGTACTGTCTTTCTTCATGCGCCTCATAGAATCGTCGGTAACCCGCTGG CGCGGACATCGGAGGTAGAA
Downstream 100 bases:
>100_bases GTGACTCCATCATCGTTTTCGACAAGGTAAAAAAGGCCTACGGCAATTTCACCGTGATCAACGAACTCGATTTCGAGGTT CGACGTGGGGAAAAAGTATC
Product: amino acid ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWVAWPAAVLIEFIRDTPLIAQL FFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGIQAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGN YLVSIMKDVPVLSVVTIVEMLNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR
Sequences:
>Translated_231_residues MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWVAWPAAVLIEFIRDTPLIAQL FFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGIQAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGN YLVSIMKDVPVLSVVTIVEMLNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR >Mature_231_residues MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWVAWPAAVLIEFIRDTPLIAQL FFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGIQAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGN YLVSIMKDVPVLSVVTIVEMLNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR
Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain
Homologues:
Organism=Escherichia coli, GI1788226, Length=209, Percent_Identity=33.9712918660287, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=32.512315270936, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=24.6575342465753, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=24.7619047619048, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI48994930, Length=210, Percent_Identity=30.952380952381, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=26.3392857142857, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786874, Length=178, Percent_Identity=26.9662921348315, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI87082239, Length=162, Percent_Identity=33.9506172839506, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788645, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1788646, Length=227, Percent_Identity=23.3480176211454, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4TG_RHISN (P55661)
Other databases:
- EMBL: U00090 - RefSeq: NP_444073.1 - ProteinModelPortal: P55661 - GeneID: 962445 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01520 - HOGENOM: HBG704821 - ProtClustDB: CLSK881659 - InterPro: IPR010065 - InterPro: IPR000515 - InterPro: IPR014341 - TIGRFAMs: TIGR03003 - TIGRFAMs: TIGR01726
Pfam domain/function: PF00528 BPD_transp_1
EC number: NA
Molecular weight: Translated: 25320; Mature: 25320
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xaf877ac)-; HASH(0xbf11848)-; HASH(0xaddea48)-; HASH(0xbd35b64)-; HASH(0xb76c230)-; HASH(0xb927058)-;
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWV CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWPAAVLIEFIRDTPLIAQLFFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGI HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH QAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGNYLVSIMKDVPVLSVVTIVEM HHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH >Mature Secondary Structure MLYGFTWDTGNGELAFAISILPMLLMGLITTLQAAFLGFFVACVLGMVFAVLRGMRTRWV CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWPAAVLIEFIRDTPLIAQLFFLYYVLPEYGIIFPAFLTGALALGIQYSAYISEVYRGGI HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH QAVDHGQREAAKSLDLPPARTFTHVILPQAIPRVIPALGNYLVSIMKDVPVLSVVTIVEM HHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LNAAKIIGDQTFNYLVPLSMVGGIYLILTIVASALVRIVDVNLPKRGVPLR HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9163424