Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519950

GI number: 16519950

Start: 188406

End: 188915

Strand: Reverse

Name: Not Available

Synonym: NGR_a01550

Alternate gene names: 16519950

Gene position: 188915-188406 (Counterclockwise)

Preceding gene: 16519946

Following gene: 16519951

Centisome position: 35.23

GC content: 48.63

Gene sequence:

>510_bases
ATGCAGGATGTCTGCAATTCTCAAGAAATCCTGCAGGATTACGCTATGGAACTTGATCGGGCAGATGTGGCGCTCCTCAA
TGCCGTACAGAAAAATAACCGGCTCACTTCCGAAGAACTCGCCGACAAGGTTGGCCTTTCACCCACAGCATGTCAGAGGA
GACTTAAACGGCTCCGTAGCCTAGGTGTGATCGAAGCGGATGTGTCCATAGTGTCTCCCAAGGCTGTCGGCCGCCCCGTA
ACGATGATTGTTATGGTGTCATTGGAACGAGAACGTGCCGATATTGTCGACAGGTTCAAGTCCTCTATTCGAAATACGCG
GGAGGTAATGATTGGTTACTACGTCACAGGTGATGCGGACTTCATCCTAATAGTGACAGCAAAGGACATGGAGGAATACG
AGGAGTTTACTCGGAGGTTTTTCTATGAGAATCACGACATCAAGGGCTTTAAGACCATGGTGGTTATGGATCGAGTGAAA
GCCACATTTGCAGTTCCAATCGAAATCTAG

Upstream 100 bases:

>100_bases
CGCGCCAAGTTCGGGTTTCGAGGTCTTTCAATTAATGGAACGCAGTTTCGAGCGTACGGGCGTCGTTCCTCGGTGATTGA
CAGCCGGAGAAAGCGTCATT

Downstream 100 bases:

>100_bases
TCCGAAACTATCGTGTTCGCCCGACGCCATAGCCGGCGAACTCGCACAAACGTAGGCTGGCGCGACCTGCTAGCGCAATG
ACCTGGAGGCCGGATGAAGT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRSLGVIEADVSIVSPKAVGRPV
TMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDADFILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVK
ATFAVPIEI

Sequences:

>Translated_169_residues
MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRSLGVIEADVSIVSPKAVGRPV
TMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDADFILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVK
ATFAVPIEI
>Mature_169_residues
MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRSLGVIEADVSIVSPKAVGRPV
TMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDADFILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVK
ATFAVPIEI

Specific function: Mediates A Global Response To Leucine. Exogenous Leucine Affects The Expression Of A Number Of Different Operons; Lrp Mediates This Effect For At Least Some Of These Operons. For Example It Is Regulator Of The Branched-Chain Amino Acid Transport Genes. [

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787116, Length=146, Percent_Identity=30.1369863013699, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=28.476821192053, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4TD_RHISN (P55658)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444070.1
- ProteinModelPortal:   P55658
- SMR:   P55658
- GeneID:   962444
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01550
- HOGENOM:   HBG740878
- ProtClustDB:   CLSK513373
- GO:   GO:0005622
- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00033
- SMART:   SM00344

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 19331; Mature: 19331

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRS
CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
LGVIEADVSIVSPKAVGRPVTMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDAD
CCCEEECCEEECCHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC
FILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVKATFAVPIEI
EEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRS
CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
LGVIEADVSIVSPKAVGRPVTMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDAD
CCCEEECCEEECCHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC
FILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVKATFAVPIEI
EEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424