Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519950
GI number: 16519950
Start: 188406
End: 188915
Strand: Reverse
Name: Not Available
Synonym: NGR_a01550
Alternate gene names: 16519950
Gene position: 188915-188406 (Counterclockwise)
Preceding gene: 16519946
Following gene: 16519951
Centisome position: 35.23
GC content: 48.63
Gene sequence:
>510_bases ATGCAGGATGTCTGCAATTCTCAAGAAATCCTGCAGGATTACGCTATGGAACTTGATCGGGCAGATGTGGCGCTCCTCAA TGCCGTACAGAAAAATAACCGGCTCACTTCCGAAGAACTCGCCGACAAGGTTGGCCTTTCACCCACAGCATGTCAGAGGA GACTTAAACGGCTCCGTAGCCTAGGTGTGATCGAAGCGGATGTGTCCATAGTGTCTCCCAAGGCTGTCGGCCGCCCCGTA ACGATGATTGTTATGGTGTCATTGGAACGAGAACGTGCCGATATTGTCGACAGGTTCAAGTCCTCTATTCGAAATACGCG GGAGGTAATGATTGGTTACTACGTCACAGGTGATGCGGACTTCATCCTAATAGTGACAGCAAAGGACATGGAGGAATACG AGGAGTTTACTCGGAGGTTTTTCTATGAGAATCACGACATCAAGGGCTTTAAGACCATGGTGGTTATGGATCGAGTGAAA GCCACATTTGCAGTTCCAATCGAAATCTAG
Upstream 100 bases:
>100_bases CGCGCCAAGTTCGGGTTTCGAGGTCTTTCAATTAATGGAACGCAGTTTCGAGCGTACGGGCGTCGTTCCTCGGTGATTGA CAGCCGGAGAAAGCGTCATT
Downstream 100 bases:
>100_bases TCCGAAACTATCGTGTTCGCCCGACGCCATAGCCGGCGAACTCGCACAAACGTAGGCTGGCGCGACCTGCTAGCGCAATG ACCTGGAGGCCGGATGAAGT
Product: AsnC family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRSLGVIEADVSIVSPKAVGRPV TMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDADFILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVK ATFAVPIEI
Sequences:
>Translated_169_residues MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRSLGVIEADVSIVSPKAVGRPV TMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDADFILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVK ATFAVPIEI >Mature_169_residues MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRSLGVIEADVSIVSPKAVGRPV TMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDADFILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVK ATFAVPIEI
Specific function: Mediates A Global Response To Leucine. Exogenous Leucine Affects The Expression Of A Number Of Different Operons; Lrp Mediates This Effect For At Least Some Of These Operons. For Example It Is Regulator Of The Branched-Chain Amino Acid Transport Genes. [
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH asnC-type DNA-binding domain
Homologues:
Organism=Escherichia coli, GI1787116, Length=146, Percent_Identity=30.1369863013699, Blast_Score=88, Evalue=3e-19, Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=28.476821192053, Blast_Score=86, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4TD_RHISN (P55658)
Other databases:
- EMBL: U00090 - RefSeq: NP_444070.1 - ProteinModelPortal: P55658 - SMR: P55658 - GeneID: 962444 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01550 - HOGENOM: HBG740878 - ProtClustDB: CLSK513373 - GO: GO:0005622 - InterPro: IPR011008 - InterPro: IPR013196 - InterPro: IPR000485 - InterPro: IPR019885 - InterPro: IPR019888 - InterPro: IPR019887 - InterPro: IPR011991 - Gene3D: G3DSA:1.10.10.10 - PRINTS: PR00033 - SMART: SM00344
Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11; SSF54909 Dimer_A_B_barrel
EC number: NA
Molecular weight: Translated: 19331; Mature: 19331
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRS CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH LGVIEADVSIVSPKAVGRPVTMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDAD CCCEEECCEEECCHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC FILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVKATFAVPIEI EEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECC >Mature Secondary Structure MQDVCNSQEILQDYAMELDRADVALLNAVQKNNRLTSEELADKVGLSPTACQRRLKRLRS CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH LGVIEADVSIVSPKAVGRPVTMIVMVSLERERADIVDRFKSSIRNTREVMIGYYVTGDAD CCCEEECCEEECCHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC FILIVTAKDMEEYEEFTRRFFYENHDIKGFKTMVVMDRVKATFAVPIEI EEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424