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The map label for this gene is y4sD

Identifier: 16519937

GI number: 16519937

Start: 211268

End: 212164

Strand: Direct

Name: y4sD

Synonym: NGR_a01680

Alternate gene names: 16519937

Gene position: 211268-212164 (Clockwise)

Preceding gene: 16519938

Following gene: 16519900

Centisome position: 39.4

GC content: 60.2

Gene sequence:

>897_bases
ATGAAAAACGTCCACAACACCATCGACGAAGCCCGCCTCGGCATCATGCTCAATGACCTGAGGCTGCCGACGATCAAAAC
GCTGTGGCCGCAATTTGCCGAACAGGCCGATCGTGAAGGGTGGCCTGCGGCTCGTTTCCTTTCGGCCATCGCCGAGCATG
AACTGGCTGAACGGGCGCATCGCAGGATCGAACGTCACCTCGCCGAGGCGCATCTGCCGCCCGGAAAGACGCTCGAGAGC
TTCGCTTTCGACGCCGTGCCCATGGTCTCCAAGGCCCAGGTCATGGCCATTGCCGCCGGCGACAGTTGGCTCGCCAAAGG
TGCCAATATCCTCCTGTTCGGTCCGCCGGGCGGCGGAAAGAGCCATCTCGCCGCCGCCATCGGCCTCGCGCTGATCGAGA
ATGGTTGGCGGGTGCTGTTCACGCGCACGACCGACCTCGTCCAGAAGCTTCAGGTCGCACGGCGTGAACTCCAGCTCGAA
TCCGCCATCGCAAAGCTCGACAAGTTCGATCTGCTCATCCTCGACGATCTGGCCTACGTCACCAAGGACCAGGCCGAAAC
CAGCGTGCTGTTCGAACTCATCTCCGCAAGATATGAGCGGCGTTCCATCATGATAACCGCCAATCAGCCCTTCGGAGAAT
GGAACCGCGTCTTTCCGGACCCGGCCATGACGCTTGCCGCGGTGGACCGACTTGTTCATCACGCAACGATCTTCGAAATG
AACGTCGAAAGCTATCGGCGACGTTCCGCCATGGAAGCCAAACGCCACCGCGGCAGACCCGCCGCCTTCGCGACAACCAA
AAGTGCTTCCCTGATTGTCGCGGAGCGACAATCAGAACACGATGAGACCCTTGCCAGCGACAATCAACATGATACCTTCA
TGCCGACCGCGACATAA

Upstream 100 bases:

>100_bases
TCGGTCCGGACCCGGATCAGTTGCCGACCGTGCATGTGCAGCTCGCATCGCTCAATAGCTATGAAGCCCTGATGGGGTCT
GCTTATGCGGGAGAGGCCGC

Downstream 100 bases:

>100_bases
GAGTCTCATCCAGATTGTCGCCGCCGTCTCATCCTGATCGCCGCGCTATACGAGATCGAGGCGATCGCCAGTCGCGAGGA
TGTGGCTCGACGGCTCATGA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKNVHNTIDEARLGIMLNDLRLPTIKTLWPQFAEQADREGWPAARFLSAIAEHELAERAHRRIERHLAEAHLPPGKTLES
FAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLE
SAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEM
NVESYRRRSAMEAKRHRGRPAAFATTKSASLIVAERQSEHDETLASDNQHDTFMPTAT

Sequences:

>Translated_298_residues
MKNVHNTIDEARLGIMLNDLRLPTIKTLWPQFAEQADREGWPAARFLSAIAEHELAERAHRRIERHLAEAHLPPGKTLES
FAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLE
SAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEM
NVESYRRRSAMEAKRHRGRPAAFATTKSASLIVAERQSEHDETLASDNQHDTFMPTAT
>Mature_298_residues
MKNVHNTIDEARLGIMLNDLRLPTIKTLWPQFAEQADREGWPAARFLSAIAEHELAERAHRRIERHLAEAHLPPGKTLES
FAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLE
SAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEM
NVESYRRRSAMEAKRHRGRPAAFATTKSASLIVAERQSEHDETLASDNQHDTFMPTAT

Specific function: Unknown

COG id: COG1484

COG function: function code L; DNA replication protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IS21/IS1162 putative ATP-binding protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4IQ_RHISN (P55500)

Other databases:

- EMBL:   U00090
- EMBL:   U00090
- EMBL:   U00090
- RefSeq:   NP_443910.1
- RefSeq:   NP_443987.1
- RefSeq:   NP_444057.1
- RefSeq:   YP_002822761.1
- RefSeq:   YP_002823007.1
- ProteinModelPortal:   P55500
- GeneID:   7788288
- GeneID:   7788535
- GeneID:   962199
- GeneID:   962430
- GeneID:   962547
- GenomeReviews:   U00090_GR
- GenomeReviews:   U00090_GR
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01680
- KEGG:   rhi:NGR_a02380
- KEGG:   rhi:NGR_a03160
- HOGENOM:   HBG695266
- ProtClustDB:   PRK08181
- InterPro:   IPR003593
- InterPro:   IPR002611
- SMART:   SM00382

Pfam domain/function: PF01695 IstB

EC number: NA

Molecular weight: Translated: 33325; Mature: 33325

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVHNTIDEARLGIMLNDLRLPTIKTLWPQFAEQADREGWPAARFLSAIAEHELAERAH
CCCHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RRIERHLAEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGK
HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCEEEECCCCCCH
SHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV
HHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHH
TKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEM
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEE
NVESYRRRSAMEAKRHRGRPAAFATTKSASLIVAERQSEHDETLASDNQHDTFMPTAT
CHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKNVHNTIDEARLGIMLNDLRLPTIKTLWPQFAEQADREGWPAARFLSAIAEHELAERAH
CCCHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RRIERHLAEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGK
HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCEEEECCCCCCH
SHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV
HHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHH
TKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEM
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEE
NVESYRRRSAMEAKRHRGRPAAFATTKSASLIVAERQSEHDETLASDNQHDTFMPTAT
CHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424