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Identifier: 16519938

GI number: 16519938

Start: 209757

End: 211271

Strand: Direct

Name: Not Available

Synonym: NGR_a01670

Alternate gene names: NA

Gene position: 209757-211271 (Clockwise)

Preceding gene: 16519942

Following gene: 16519937

Centisome position: 39.12

GC content: 62.57

Gene sequence:

>1515_bases
GTGCCGGGTCGCCATGTAACCGATCATCAGATGAGATTATTCATGAAGTACCGACAAACGCATTCTGTTGAGGTCGCCGC
CGCGAAGGCGTCGATCAGCCGGGCGACGGCGTTCCGCATGGAGAAAGAGCAGCGCCTTCCGTCGCAGAACAAGCCGCCCC
GCGGTCGGCGTCGACCCGATCCGCTTGAGCATATCTTTGATGCGGAGGTCGTTCCGCTCCTCAAGGCCGCTCCCGGCATT
CGTGCGGTCGCCGTTTACGACGAGATGCTGCGGCGTCATCCGGAACTGCCCGAAGGCATTCGCCGCACACTTGAGCGGCG
CATCCGGTCATGGCGGGCGGTTCACGGTGAAGCACAGGAGGTGATCTTCCGCCAGACGCACGAGCCCGGCCGACTAGGGC
TGTCGGATTTTACCGACATGGGCAGCCTCAGCGTGACGATCGCCGGCCAACCGCTCGACCATCTGCTCTATCACTTCCGG
CTGGTTTGGTCGGGTTTTGAGCACGCCCATGTCATCCTTGGCGGCGAAAGCTTCGTCGCCTTGGCGGAGGGCCTGCAGAA
CGCCCTGTGGTCGGTCGGCGGTTCGCCGCTCTATCACCGCAGCGACAGCCTGTCGGCTGCCTTCCGCAACCTCGATGCCG
ATGCCAAGGTCGATCTGACAAACCGCTATGAGGAGCTGTGCGCTCACTACCGGATGACGCCGACGCGCAACAACAAGGGC
GTCGCCCACGAGAACGGCTCAATCGAAAGCTCCCACGGCCATCTCAAGAACGCAGTCCGCGATGCACTCCTGATGCGCGG
CACCAGAGACTTCGACGATCTGCGCTCCTACCGCGCCTTCATCGACGAGATCGTCAGCCGCCGCAATGCCGCGCATGGCA
AGCGCATTGATGCCGAGCGCCCGCATCTGCAGGTGCTTCCCGAGCGCCGCACCACCGACTTCGAGGAGGTAGTCGTCACC
GTGTCGCGCACCGGCGGCTTCGCCTTGCGCAAAGTCTTCTACACCGTCCCCTCCCGTTTGATCGGCCATCGGCTGCGTGT
GCGTTTGTTTGACGATCGTCTCGACGTCTTCATCGGCGGCACGCATCTGCTGACGTTGCCACGAGGTCGCGCCCACGCGA
GCGGCAAGCATGACCAGGTCGTCAACTATCACCACGTCATCCACTCTCTGCGCAAAAAGCCCATGGCGCTTCTCAACCTG
GTCTATCGCGACAAGCTCTTCCCCCGGCCGGAATATCGCAGGGCTTTCGACGCTCTCATCGAGCAACTGCCTGACCGGCA
GGCTTGCAAGATCACCGTCGAATTGCTGGCCCTGGCTCATGATCGCGGTTGCGAGCGTGAACTGGCCGAGGAGCTTGCCA
GAACGCTCGACGCCCGCAAACTGCCCGACCTGATGGCCTTGAGAGCCATCTTCGGTCCGGACCCGGATCAGTTGCCGACC
GTGCATGTGCAGCTCGCATCGCTCAATAGCTATGAAGCCCTGATGGGGTCTGCTTATGCGGGAGAGGCCGCATGA

Upstream 100 bases:

>100_bases
CGACCGGAGTTACACCCCCGCCGCGGCGCAATTTTTAGGCGTCTCATGATCGCGGTCGGCCCGCTACGGTGGCGGTTTTC
TGGAATGGAGAACCACCTTT

Downstream 100 bases:

>100_bases
AAAACGTCCACAACACCATCGACGAAGCCCGCCTCGGCATCATGCTCAATGACCTGAGGCTGCCGACGATCAAAACGCTG
TGGCCGCAATTTGCCGAACA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MPGRHVTDHQMRLFMKYRQTHSVEVAAAKASISRATAFRMEKEQRLPSQNKPPRGRRRPDPLEHIFDAEVVPLLKAAPGI
RAVAVYDEMLRRHPELPEGIRRTLERRIRSWRAVHGEAQEVIFRQTHEPGRLGLSDFTDMGSLSVTIAGQPLDHLLYHFR
LVWSGFEHAHVILGGESFVALAEGLQNALWSVGGSPLYHRSDSLSAAFRNLDADAKVDLTNRYEELCAHYRMTPTRNNKG
VAHENGSIESSHGHLKNAVRDALLMRGTRDFDDLRSYRAFIDEIVSRRNAAHGKRIDAERPHLQVLPERRTTDFEEVVVT
VSRTGGFALRKVFYTVPSRLIGHRLRVRLFDDRLDVFIGGTHLLTLPRGRAHASGKHDQVVNYHHVIHSLRKKPMALLNL
VYRDKLFPRPEYRRAFDALIEQLPDRQACKITVELLALAHDRGCERELAEELARTLDARKLPDLMALRAIFGPDPDQLPT
VHVQLASLNSYEALMGSAYAGEAA

Sequences:

>Translated_504_residues
MPGRHVTDHQMRLFMKYRQTHSVEVAAAKASISRATAFRMEKEQRLPSQNKPPRGRRRPDPLEHIFDAEVVPLLKAAPGI
RAVAVYDEMLRRHPELPEGIRRTLERRIRSWRAVHGEAQEVIFRQTHEPGRLGLSDFTDMGSLSVTIAGQPLDHLLYHFR
LVWSGFEHAHVILGGESFVALAEGLQNALWSVGGSPLYHRSDSLSAAFRNLDADAKVDLTNRYEELCAHYRMTPTRNNKG
VAHENGSIESSHGHLKNAVRDALLMRGTRDFDDLRSYRAFIDEIVSRRNAAHGKRIDAERPHLQVLPERRTTDFEEVVVT
VSRTGGFALRKVFYTVPSRLIGHRLRVRLFDDRLDVFIGGTHLLTLPRGRAHASGKHDQVVNYHHVIHSLRKKPMALLNL
VYRDKLFPRPEYRRAFDALIEQLPDRQACKITVELLALAHDRGCERELAEELARTLDARKLPDLMALRAIFGPDPDQLPT
VHVQLASLNSYEALMGSAYAGEAA
>Mature_503_residues
PGRHVTDHQMRLFMKYRQTHSVEVAAAKASISRATAFRMEKEQRLPSQNKPPRGRRRPDPLEHIFDAEVVPLLKAAPGIR
AVAVYDEMLRRHPELPEGIRRTLERRIRSWRAVHGEAQEVIFRQTHEPGRLGLSDFTDMGSLSVTIAGQPLDHLLYHFRL
VWSGFEHAHVILGGESFVALAEGLQNALWSVGGSPLYHRSDSLSAAFRNLDADAKVDLTNRYEELCAHYRMTPTRNNKGV
AHENGSIESSHGHLKNAVRDALLMRGTRDFDDLRSYRAFIDEIVSRRNAAHGKRIDAERPHLQVLPERRTTDFEEVVVTV
SRTGGFALRKVFYTVPSRLIGHRLRVRLFDDRLDVFIGGTHLLTLPRGRAHASGKHDQVVNYHHVIHSLRKKPMALLNLV
YRDKLFPRPEYRRAFDALIEQLPDRQACKITVELLALAHDRGCERELAEELARTLDARKLPDLMALRAIFGPDPDQLPTV
HVQLASLNSYEALMGSAYAGEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4JA_RHISN (P55501)

Other databases:

- EMBL:   U00090
- EMBL:   U00090
- EMBL:   U00090
- RefSeq:   NP_443911.1
- RefSeq:   NP_443988.1
- RefSeq:   NP_444058.1
- RefSeq:   YP_002822762.1
- RefSeq:   YP_002823008.1
- RefSeq:   YP_002823692.1
- GeneID:   7788036
- GeneID:   7788289
- GeneID:   7788536
- GeneID:   962198
- GeneID:   962219
- GeneID:   962264
- GenomeReviews:   U00090_GR
- GenomeReviews:   U00090_GR
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01670
- KEGG:   rhi:NGR_a02370
- KEGG:   rhi:NGR_a03150
- HOGENOM:   HBG474734
- ProtClustDB:   CLSK864457
- InterPro:   IPR001584
- InterPro:   IPR012337

Pfam domain/function: PF00665 rve; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 57229; Mature: 57098

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50994 INTEGRASE; PS00147 ARGINASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRHVTDHQMRLFMKYRQTHSVEVAAAKASISRATAFRMEKEQRLPSQNKPPRGRRRPD
CCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PLEHIFDAEVVPLLKAAPGIRAVAVYDEMLRRHPELPEGIRRTLERRIRSWRAVHGEAQE
HHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
VIFRQTHEPGRLGLSDFTDMGSLSVTIAGQPLDHLLYHFRLVWSGFEHAHVILGGESFVA
HHHHHCCCCCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH
LAEGLQNALWSVGGSPLYHRSDSLSAAFRNLDADAKVDLTNRYEELCAHYRMTPTRNNKG
HHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCCCCCCC
VAHENGSIESSHGHLKNAVRDALLMRGTRDFDDLRSYRAFIDEIVSRRNAAHGKRIDAER
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PHLQVLPERRTTDFEEVVVTVSRTGGFALRKVFYTVPSRLIGHRLRVRLFDDRLDVFIGG
CCCEECCCCCCCCHHHHEEEHCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECC
THLLTLPRGRAHASGKHDQVVNYHHVIHSLRKKPMALLNLVYRDKLFPRPEYRRAFDALI
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHH
EQLPDRQACKITVELLALAHDRGCERELAEELARTLDARKLPDLMALRAIFGPDPDQLPT
HHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCE
VHVQLASLNSYEALMGSAYAGEAA
EEEEEECCCHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PGRHVTDHQMRLFMKYRQTHSVEVAAAKASISRATAFRMEKEQRLPSQNKPPRGRRRPD
CCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PLEHIFDAEVVPLLKAAPGIRAVAVYDEMLRRHPELPEGIRRTLERRIRSWRAVHGEAQE
HHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
VIFRQTHEPGRLGLSDFTDMGSLSVTIAGQPLDHLLYHFRLVWSGFEHAHVILGGESFVA
HHHHHCCCCCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHH
LAEGLQNALWSVGGSPLYHRSDSLSAAFRNLDADAKVDLTNRYEELCAHYRMTPTRNNKG
HHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCCCCCCC
VAHENGSIESSHGHLKNAVRDALLMRGTRDFDDLRSYRAFIDEIVSRRNAAHGKRIDAER
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PHLQVLPERRTTDFEEVVVTVSRTGGFALRKVFYTVPSRLIGHRLRVRLFDDRLDVFIGG
CCCEECCCCCCCCHHHHEEEHCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECC
THLLTLPRGRAHASGKHDQVVNYHHVIHSLRKKPMALLNLVYRDKLFPRPEYRRAFDALI
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHH
EQLPDRQACKITVELLALAHDRGCERELAEELARTLDARKLPDLMALRAIFGPDPDQLPT
HHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCE
VHVQLASLNSYEALMGSAYAGEAA
EEEEEECCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424