Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519900
GI number: 16519900
Start: 212797
End: 213375
Strand: Direct
Name: Not Available
Synonym: NGR_a01690
Alternate gene names: NA
Gene position: 212797-213375 (Clockwise)
Preceding gene: 16519937
Following gene: 16519935
Centisome position: 39.69
GC content: 63.21
Gene sequence:
>579_bases ATGGGTTCGGCGGTTTTGTTGCGTGATGATTTCGACGGAGCTGCTCTTCGACAGCTCGCACGGCAGACGAAGGATGCCAA TCAGGCCCGGCGGTTGCTGGCTCTTGCCGCGATCTATGACGGCGGCCCGCGCTCGGATGCGGCACGGATCGGCAGCGTGA CGCTGCAGATTGTGCGGGATTGGGTCCTGCGTTTCAACGCGCGCGGCCCCGATGGACTGGTGAATGGCAAAGCGCCTGGC GGCCGAGCGAAGTTGAATGCCGCTCAGCGCCAGGCTCTTGCAAAGGTCGTCGAGAGCGGCCCGATCCCGGCGATCCACGG TGTTGTCCGTTGGCGGCGCAAGGACCTGGTTCAGTGGATATTCCAGGAATTCCGCATCTCGATGGACGAGACGACGGTCG GCCGCGAGTTGAAGGCGCTCGGCTTTGCCAAGCTGTCGGCTCGCCCACGCCACTACGCTCAGAACGAGCTGGAAGTAGAC GCTTTTAAAAAGACTTCCCCGCCGCTCTGGCGGAAATCCGAAGCCGGCTCCCGCAAGGCACGGACATCGAACTCTGGTGG GCCGACGAAGCGCGCATAG
Upstream 100 bases:
>100_bases GGATCAACATGCCGTAATACCAACGAGCGCCGTTTCTGACTCTCATGGGATTCCCAAGGTGTCGCGAATCTGAATCCATG CTGCAAACAGGAGGTTTGCG
Downstream 100 bases:
>100_bases GCCAGAAGAACAAGATCACGCGCCGATGGGCGCGTCGTGGCACCAGACCATCCGCGCCCTTGGATCAGCGCACCATGTTG AGGTGGACGGCTCCCAACGG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MGSAVLLRDDFDGAALRQLARQTKDANQARRLLALAAIYDGGPRSDAARIGSVTLQIVRDWVLRFNARGPDGLVNGKAPG GRAKLNAAQRQALAKVVESGPIPAIHGVVRWRRKDLVQWIFQEFRISMDETTVGRELKALGFAKLSARPRHYAQNELEVD AFKKTSPPLWRKSEAGSRKARTSNSGGPTKRA
Sequences:
>Translated_192_residues MGSAVLLRDDFDGAALRQLARQTKDANQARRLLALAAIYDGGPRSDAARIGSVTLQIVRDWVLRFNARGPDGLVNGKAPG GRAKLNAAQRQALAKVVESGPIPAIHGVVRWRRKDLVQWIFQEFRISMDETTVGRELKALGFAKLSARPRHYAQNELEVD AFKKTSPPLWRKSEAGSRKARTSNSGGPTKRA >Mature_191_residues GSAVLLRDDFDGAALRQLARQTKDANQARRLLALAAIYDGGPRSDAARIGSVTLQIVRDWVLRFNARGPDGLVNGKAPGG RAKLNAAQRQALAKVVESGPIPAIHGVVRWRRKDLVQWIFQEFRISMDETTVGRELKALGFAKLSARPRHYAQNELEVDA FKKTSPPLWRKSEAGSRKARTSNSGGPTKRA
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To A.xylinum IS1268 ORFA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4PG_RHISN (P55616)
Other databases:
- EMBL: U00090 - EMBL: U00090 - RefSeq: NP_444020.1 - RefSeq: NP_444056.1 - GeneID: 962396 - GeneID: 962431 - GenomeReviews: U00090_GR - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01690 - KEGG: rhi:NGR_a02050 - HOGENOM: HBG493329 - ProtClustDB: CLSK893866 - InterPro: IPR009057
Pfam domain/function: SSF46689 Homeodomain_like
EC number: NA
Molecular weight: Translated: 21094; Mature: 20963
Theoretical pI: Translated: 11.73; Mature: 11.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSAVLLRDDFDGAALRQLARQTKDANQARRLLALAAIYDGGPRSDAARIGSVTLQIVRD CCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH WVLRFNARGPDGLVNGKAPGGRAKLNAAQRQALAKVVESGPIPAIHGVVRWRRKDLVQWI HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FQEFRISMDETTVGRELKALGFAKLSARPRHYAQNELEVDAFKKTSPPLWRKSEAGSRKA HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHCCCCCCCCCCCCCCCCC RTSNSGGPTKRA CCCCCCCCCCCC >Mature Secondary Structure GSAVLLRDDFDGAALRQLARQTKDANQARRLLALAAIYDGGPRSDAARIGSVTLQIVRD CCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH WVLRFNARGPDGLVNGKAPGGRAKLNAAQRQALAKVVESGPIPAIHGVVRWRRKDLVQWI HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FQEFRISMDETTVGRELKALGFAKLSARPRHYAQNELEVDAFKKTSPPLWRKSEAGSRKA HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHCCCCCCCCCCCCCCCCC RTSNSGGPTKRA CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424