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Identifier: 16519922

GI number: 16519922

Start: 232227

End: 233072

Strand: Direct

Name: Not Available

Synonym: NGR_a01830

Alternate gene names: 16519922

Gene position: 232227-233072 (Clockwise)

Preceding gene: 16519923

Following gene: 16519918

Centisome position: 43.31

GC content: 63.48

Gene sequence:

>846_bases
ATGAGCGAACACTTACTCCTGGCGCCGCTCCTGGAGTCCTACTTTCGCCGGCGCTTGACCAAACAACGCAACGCGACTCC
CGCGACCATGGCCAGCTATCGCGACGCCTTGCGCATGCTCATCCTCTTTGCCGCCACCCGGTTGCGGAAGAAGCCGGCGG
CTCTGGTGCTCGAGGAGCTCGATCGAGACCTCATTCTCGCGTTTCTCGACGAACTCGAGGAGAAGCGGAACAACACGATC
GCCACGCGCAACGCCCGCCTAGCGGCGATCCGATCGTTCTTCCACCATGTCGCGGCCGCCGATCCGGCGTCCTTCGGTGT
CGCCCAACGCGTGCTGACGATTCCCATAAAACGGGCGCACATCGAGGTGACGCATCACCTCACCAAGGCCGAAGTGGACG
CCCTCATTGAGGCGCCCAATCCAAGGACGCCCCGTGGTCGGCGTGACCGCACGTTTTTACTGTTCCTGGCACGGACCGGC
GCGCGGGTCTCCGAAGCTACCGGCGTCAACGCAAACGACCTTCAGTTGGAACGGTCGCACCCGCAAGTGCTGCTGCGCGG
CAAAGGGCGCAGAGACCGCGTCATCCCCATTCCTCAGGATCTGGCGAGAGCACTGACAGCCTTGTTGGCCGAGCACGGAA
TCGCGAACCACGAGCCGCGACCGATATTCGTCGGCGCCCGCAACGAGCGCCTGACGCGCTTCGGAGCAACCCACATCGTG
CGGCGTGCGGTGGCCCAGGCCGTGACCATCAGGCCGACCTTGGCCCAAAAGCCTATATCGCCGCACATCTTCCGACACTA
TCTACCCCACCCGACTATGTCGGGTACCGAAAACGCAAGCGTCTGA

Upstream 100 bases:

>100_bases
TCGGCCACGCCAATTACAGTGACACAGCCTACTACCTCACTGGCTCGGTGGATCTTCTCGCCATGGCGGCGGAGCGCGCC
TTCCTCGATGGAGGCGCAGC

Downstream 100 bases:

>100_bases
GGAACAACGAGATTTCCTACAGGATCGGCCGAGCCACACGACATAGTCAGCGGGATCTACAGGCTGTTCAAGAACGCCAG
CAGATTGTCGTCGGGCCGGA

Product: DNA integration/recombination/inversion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEEKRNNTI
ATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTG
ARVSEATGVNANDLQLERSHPQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV
RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV

Sequences:

>Translated_281_residues
MSEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEEKRNNTI
ATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTG
ARVSEATGVNANDLQLERSHPQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV
RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV
>Mature_280_residues
SEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEEKRNNTIA
TRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGA
RVSEATGVNANDLQLERSHPQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIVR
RAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV

Specific function: Seems to be non-functional

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

Organism=Escherichia coli, GI1789261, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4RD_RHISN (P55637)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444042.1
- ProteinModelPortal:   P55637
- SMR:   P55637
- GeneID:   962433
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01830
- HOGENOM:   HBG727654
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 31579; Mature: 31448

Theoretical pI: Translated: 11.86; Mature: 11.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEEL
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DRDLILAFLDELEEKRNNTIATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAH
HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
IEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGARVSEATGVNANDLQLERSH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEECCC
PQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV
CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV
HHHHHHHHHCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEEL
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DRDLILAFLDELEEKRNNTIATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAH
HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
IEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGARVSEATGVNANDLQLERSH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEECCC
PQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV
CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV
HHHHHHHHHCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424