Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519922
GI number: 16519922
Start: 232227
End: 233072
Strand: Direct
Name: Not Available
Synonym: NGR_a01830
Alternate gene names: 16519922
Gene position: 232227-233072 (Clockwise)
Preceding gene: 16519923
Following gene: 16519918
Centisome position: 43.31
GC content: 63.48
Gene sequence:
>846_bases ATGAGCGAACACTTACTCCTGGCGCCGCTCCTGGAGTCCTACTTTCGCCGGCGCTTGACCAAACAACGCAACGCGACTCC CGCGACCATGGCCAGCTATCGCGACGCCTTGCGCATGCTCATCCTCTTTGCCGCCACCCGGTTGCGGAAGAAGCCGGCGG CTCTGGTGCTCGAGGAGCTCGATCGAGACCTCATTCTCGCGTTTCTCGACGAACTCGAGGAGAAGCGGAACAACACGATC GCCACGCGCAACGCCCGCCTAGCGGCGATCCGATCGTTCTTCCACCATGTCGCGGCCGCCGATCCGGCGTCCTTCGGTGT CGCCCAACGCGTGCTGACGATTCCCATAAAACGGGCGCACATCGAGGTGACGCATCACCTCACCAAGGCCGAAGTGGACG CCCTCATTGAGGCGCCCAATCCAAGGACGCCCCGTGGTCGGCGTGACCGCACGTTTTTACTGTTCCTGGCACGGACCGGC GCGCGGGTCTCCGAAGCTACCGGCGTCAACGCAAACGACCTTCAGTTGGAACGGTCGCACCCGCAAGTGCTGCTGCGCGG CAAAGGGCGCAGAGACCGCGTCATCCCCATTCCTCAGGATCTGGCGAGAGCACTGACAGCCTTGTTGGCCGAGCACGGAA TCGCGAACCACGAGCCGCGACCGATATTCGTCGGCGCCCGCAACGAGCGCCTGACGCGCTTCGGAGCAACCCACATCGTG CGGCGTGCGGTGGCCCAGGCCGTGACCATCAGGCCGACCTTGGCCCAAAAGCCTATATCGCCGCACATCTTCCGACACTA TCTACCCCACCCGACTATGTCGGGTACCGAAAACGCAAGCGTCTGA
Upstream 100 bases:
>100_bases TCGGCCACGCCAATTACAGTGACACAGCCTACTACCTCACTGGCTCGGTGGATCTTCTCGCCATGGCGGCGGAGCGCGCC TTCCTCGATGGAGGCGCAGC
Downstream 100 bases:
>100_bases GGAACAACGAGATTTCCTACAGGATCGGCCGAGCCACACGACATAGTCAGCGGGATCTACAGGCTGTTCAAGAACGCCAG CAGATTGTCGTCGGGCCGGA
Product: DNA integration/recombination/inversion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MSEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEEKRNNTI ATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTG ARVSEATGVNANDLQLERSHPQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV
Sequences:
>Translated_281_residues MSEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEEKRNNTI ATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTG ARVSEATGVNANDLQLERSHPQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV >Mature_280_residues SEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEEKRNNTIA TRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGA RVSEATGVNANDLQLERSHPQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIVR RAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV
Specific function: Seems to be non-functional
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family
Homologues:
Organism=Escherichia coli, GI1789261, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4RD_RHISN (P55637)
Other databases:
- EMBL: U00090 - RefSeq: NP_444042.1 - ProteinModelPortal: P55637 - SMR: P55637 - GeneID: 962433 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01830 - HOGENOM: HBG727654 - InterPro: IPR011010 - InterPro: IPR013762 - InterPro: IPR002104 - InterPro: IPR023109 - InterPro: IPR004107 - Gene3D: G3DSA:1.10.150.130 - Gene3D: G3DSA:1.10.443.10
Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz
EC number: NA
Molecular weight: Translated: 31579; Mature: 31448
Theoretical pI: Translated: 11.86; Mature: 11.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEEL CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH DRDLILAFLDELEEKRNNTIATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAH HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH IEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGARVSEATGVNANDLQLERSH HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEECCC PQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV HHHHHHHHHCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SEHLLLAPLLESYFRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEEL CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH DRDLILAFLDELEEKRNNTIATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAH HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH IEVTHHLTKAEVDALIEAPNPRTPRGRRDRTFLLFLARTGARVSEATGVNANDLQLERSH HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEECCC PQVLLRGKGRRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIV CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH RRAVAQAVTIRPTLAQKPISPHIFRHYLPHPTMSGTENASV HHHHHHHHHCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424