Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519918

GI number: 16519918

Start: 236827

End: 237753

Strand: Direct

Name: Not Available

Synonym: NGR_a01870

Alternate gene names: 16519918

Gene position: 236827-237753 (Clockwise)

Preceding gene: 16519922

Following gene: 16519917

Centisome position: 44.17

GC content: 60.3

Gene sequence:

>927_bases
ATGGGACGGCTGTTTGGCAGCCTATTCCATCAGACAGAGGAGCTCGTCATGACCCCACTTCGCCAGCGCATGAGCGAGGA
CATGCAGGTGCGCAATTTCTCGCTCAATACCCAGCTTTCATATCTGCGGCAGGTGTCGCTGTTTGCACGACACTTCGGCA
AGGCGCCGGACTTGCTCGGCCGCGAGGATATTCGGACCTATCAGGTCTATCTGGCCAACGAGAAGAAGCTGGCGCCTAAC
TCAATCCATATCGCCATTGCGGCGTTGCGCTTTTTCTTCAGCGTCACACTCGAGAGGGACTGGGTGCCTGCAGAGGTATT
GCCGCTTCCGAAGAAGCCGCAGAAGCTGCCGATCATCCTCAGTCCGGATGAAGTACAGCACTTTCTCGGCTGCGTGCTTG
ATCTCAAACACCACGCCATCCTGACGACGTGCTATGCCGCTGGCTTGCGCATCTCGGAAGCGGTTCAGCTGAAGCCCACG
GACATCGACAGCCAGAGAATGGTCGTCCGTGTCGAGCAGGGTAAAGGCCAGAAGGACCGCTATGTGATGTTGTCGCCCAA
GCTCCTGGAGATCCTGCGCGACTATTGGAGGATGCCGCGGCCAAAAGAGTGGCTCTTCCCCGGAGATCGCGCCGGCCACC
CGATCACTCGGGATGCAGTCGGGCAAGCCTGTGCGAAAGCGCACGATCTCTCCCGCTTGTCCAAACCGGTGACGCCACAT
AGCTTGCGGCATGCCTTCGCCGTCCATCTCCTTGAGGCCGGCGCCGACGTGCGCACCATTCAATTGCTGCTCGGTCACCG
CAGCCTCGCGACCACCGCCCACTACCTGCGCATCGCCACCAACAAAGTCTGCGCCACCTCAAGCCCGTTCGAGCTTTTGC
CCCGTCCGGCGCCCACGCCGCCGCCCGCCAAACCTGAGTATTTCTGA

Upstream 100 bases:

>100_bases
TAATCTCGCCCGGCACATAATCGCATTTGGACTAACCCGCTCCGCTACCGCGGAGCGGCAAGGAGGTCATGTATTCAGTA
GGAGCCCCAACTGCGCGACG

Downstream 100 bases:

>100_bases
GCTCCCGATGGCCCGTTCGGGGCCGGAAGTGGCGGATATCTTCCGTCGCTACGGCGAGGCCTATCGTGCCCAGCACACGT
CGCTTTCGACCGCGCAGCGC

Product: DNA integration/recombination/inversion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MGRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVYLANEKKLAPN
SIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPT
DIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH
SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTPPPAKPEYF

Sequences:

>Translated_308_residues
MGRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVYLANEKKLAPN
SIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPT
DIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH
SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTPPPAKPEYF
>Mature_307_residues
GRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVYLANEKKLAPNS
IHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTD
IDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPHS
LRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTPPPAKPEYF

Specific function: May function as an integrase

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

Organism=Escherichia coli, GI1789261, Length=273, Percent_Identity=34.4322344322344, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1790244, Length=226, Percent_Identity=30.5309734513274, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4QK_RHISN (P55632)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444038.1
- ProteinModelPortal:   P55632
- SMR:   P55632
- GeneID:   962408
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01870
- HOGENOM:   HBG727654
- ProtClustDB:   CLSK544552
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 34958; Mature: 34827

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: ACT_SITE 275-275

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
REDIRTYQVYLANEKKLAPNSIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIIL
CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEE
SPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCC
YVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH
EEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTP
HHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCC
PPAKPEYF
CCCCCCCC
>Mature Secondary Structure 
GRLFGSLFHQTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
REDIRTYQVYLANEKKLAPNSIHIAIAALRFFFSVTLERDWVPAEVLPLPKKPQKLPIIL
CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEE
SPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCC
YVMLSPKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPH
EEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
SLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCATSSPFELLPRPAPTP
HHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCC
PPAKPEYF
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424