Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519923
GI number: 16519923
Start: 231298
End: 232230
Strand: Direct
Name: Not Available
Synonym: NGR_a01820
Alternate gene names: 16519923
Gene position: 231298-232230 (Clockwise)
Preceding gene: 16519924
Following gene: 16519922
Centisome position: 43.14
GC content: 62.27
Gene sequence:
>933_bases ATGACCGCCTTTGCCCGATTCCTCGGCGAGAAGGTCGAGCGTTACATCGACCTGCGTCACTCGCTCGGCTATGCCTTCAG CAAACAAGCCGGCACGTTGCGGGCTTTCGTCCGCTACGTTGAACGCGCTCAATTCGATGCGCCCGCCACCCGGACTATGG CGCTGGACTTCGTCCTGTCGTTCGGCGGCGCCGCCAACAGCCGCGCCACTCGTCACGGCGTGCTCCGCCGATTCTACGAG TATCTCGCTGTCTATGACGCCCAAACCGAAGCCCTGAAGCGCAGAGCCTTTCCTAGATCCAGGGCGATTCCGCCTCCACG TATCCTCAGCGAGGCAGAGTTGGCGTCGCTCATCGACGCATGCGCCCGCATTTCGCCAGGCATCCCTCTCAGGGGGCTGA CGATGGCGACGCTGATCGGACTGTTAGCAAGCTCGGGACTGCGGTCGGGCGAAGTGGTCAGGCTTGATCGTTCCGATGTC GATCTGACCAACGGGGTTCTTCTGGTTCGGAAGACGAAGTTCCGCAAGGATCGTCTCGTTCCGGTTCACGCGACGACCCA AACAGCGCTTTGTCGCTATGCCCGTGAGCGCGATGCCGCTTTTCCCAGTCCCAAGGACCAGGCCTTCTTCCTCAGCTCTC GTGGCAACCGCCTCTCGGCGACTGGCTTGCAATGCGGATTTGCTCAGGTCCGCAAGTTCGCCGGCCTTGATGACGGCAAG ACGTTGCGGCCGCACGATCTGCGGCACCGGTTTGCCGTGACCCGCATGAGCCTTTGGCATCAACAACGCGCCAACGTCCA GGCGCTACTCCCGGTGCTCGCCACCTATCTCGGCCACGCCAATTACAGTGACACAGCCTACTACCTCACTGGCTCGGTGG ATCTTCTCGCCATGGCGGCGGAGCGCGCCTTCCTCGATGGAGGCGCAGCATGA
Upstream 100 bases:
>100_bases ATCTTCTTGGTCACCGGAGCATCAACACAACGGCGCTGTACGTAAAGGTTGCGGCCTCGCAACTCGCCGAGGTCGCACTC CCCTTTCCGGGAGGCGCTGC
Downstream 100 bases:
>100_bases GCGAACACTTACTCCTGGCGCCGCTCCTGGAGTCCTACTTTCGCCGGCGCTTGACCAAACAACGCAACGCGACTCCCGCG ACCATGGCCAGCTATCGCGA
Product: DNA integration/recombination/inversion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MTAFARFLGEKVERYIDLRHSLGYAFSKQAGTLRAFVRYVERAQFDAPATRTMALDFVLSFGGAANSRATRHGVLRRFYE YLAVYDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDACARISPGIPLRGLTMATLIGLLASSGLRSGEVVRLDRSDV DLTNGVLLVRKTKFRKDRLVPVHATTQTALCRYARERDAAFPSPKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGK TLRPHDLRHRFAVTRMSLWHQQRANVQALLPVLATYLGHANYSDTAYYLTGSVDLLAMAAERAFLDGGAA
Sequences:
>Translated_310_residues MTAFARFLGEKVERYIDLRHSLGYAFSKQAGTLRAFVRYVERAQFDAPATRTMALDFVLSFGGAANSRATRHGVLRRFYE YLAVYDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDACARISPGIPLRGLTMATLIGLLASSGLRSGEVVRLDRSDV DLTNGVLLVRKTKFRKDRLVPVHATTQTALCRYARERDAAFPSPKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGK TLRPHDLRHRFAVTRMSLWHQQRANVQALLPVLATYLGHANYSDTAYYLTGSVDLLAMAAERAFLDGGAA >Mature_309_residues TAFARFLGEKVERYIDLRHSLGYAFSKQAGTLRAFVRYVERAQFDAPATRTMALDFVLSFGGAANSRATRHGVLRRFYEY LAVYDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDACARISPGIPLRGLTMATLIGLLASSGLRSGEVVRLDRSDVD LTNGVLLVRKTKFRKDRLVPVHATTQTALCRYARERDAAFPSPKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGKT LRPHDLRHRFAVTRMSLWHQQRANVQALLPVLATYLGHANYSDTAYYLTGSVDLLAMAAERAFLDGGAA
Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4RE_RHISN (P55638)
Other databases:
- EMBL: U00090 - RefSeq: NP_444043.1 - ProteinModelPortal: P55638 - GeneID: 962419 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01820 - HOGENOM: HBG373304 - ProtClustDB: CLSK809015 - InterPro: IPR011010 - InterPro: IPR013762 - InterPro: IPR002104 - Gene3D: G3DSA:1.10.443.10
Pfam domain/function: PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz
EC number: NA
Molecular weight: Translated: 34359; Mature: 34228
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: ACT_SITE 282-282
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFARFLGEKVERYIDLRHSLGYAFSKQAGTLRAFVRYVERAQFDAPATRTMALDFVLS CCHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH FGGAANSRATRHGVLRRFYEYLAVYDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDA HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH CARISPGIPLRGLTMATLIGLLASSGLRSGEVVRLDRSDVDLTNGVLLVRKTKFRKDRLV HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCEE PVHATTQTALCRYARERDAAFPSPKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGK EEECHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCC TLRPHDLRHRFAVTRMSLWHQQRANVQALLPVLATYLGHANYSDTAYYLTGSVDLLAMAA CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH ERAFLDGGAA HHHHHCCCCC >Mature Secondary Structure TAFARFLGEKVERYIDLRHSLGYAFSKQAGTLRAFVRYVERAQFDAPATRTMALDFVLS CHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH FGGAANSRATRHGVLRRFYEYLAVYDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDA HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH CARISPGIPLRGLTMATLIGLLASSGLRSGEVVRLDRSDVDLTNGVLLVRKTKFRKDRLV HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCEE PVHATTQTALCRYARERDAAFPSPKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGK EEECHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCC TLRPHDLRHRFAVTRMSLWHQQRANVQALLPVLATYLGHANYSDTAYYLTGSVDLLAMAA CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH ERAFLDGGAA HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424