Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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The map label for this gene is bxrF
Identifier: 16519913
GI number: 16519913
Start: 244618
End: 246882
Strand: Direct
Name: bxrF
Synonym: NGR_a01920
Alternate gene names: 16519913
Gene position: 244618-246882 (Clockwise)
Preceding gene: 16519914
Following gene: 16519911
Centisome position: 45.62
GC content: 61.55
Gene sequence:
>2265_bases ATGGGCGGGTTAAGCGCGATGCAGCGACGCATCGACTTGTTAGTGGAGGGCGGTGATGAATACGACGCTTGTTCTCATTT CAGGAGCGTTGTGATGTGGGACAAGAGCCTGCGGCCACCGCTTCCGCGTGCCGAGCCACGGATCCGTGTCCTTCATGACG ACGTCACTGTCGACCGGTATGGATGGCTTCGCGACCGAGAGAATCCCGACGTCCGCGCGTATCTTGAAGCCGAAAACAGC TATGCAGAGCAAGCGACAGCTCACCTGAGAAGACTAAAGACTGAGCTCATCGCCGAGATCGAAGGGCGTCAGCCTTGCGA GGGCGCCACGCCACCGTTCCAAGTTGGGCCGTTTGACTACTTCCAGGGACACGAGCGGGGGCTGCCTCATCCGGTATGGT GGCGGCGGCCGGTGACCGGAGGTTCGGCCGAGCTTGTCCTCGACCCGAACGCGATACCCGGGGCCGACGTCTTCTATTGG CTCGGTGTGTTCGAGCCGAGTGACGACGGGCGTTACCTAGCGTTTAGCGTTGATCTCATCGGTGCCGAGCGCTACGAGTT AAGGGTGCGAGACATGTCCGACGGACGCGATGTCTGGCGAGACGCGGGTAGCGTCGGGCAGGTTGTCTGGGCCGCCGACA ATCATACGCTCTTTTTCACACGGGAGCGGCCTGACCGGCGGCAACATCATCAGATCGTCCGCTTGAACGTCGGGCGAGGA AACTCGGAGGTGGTGTTCGAGGAGGCAAACGAGCGACTGGCGGTGCTGGTTCGGCGTTCTCAGAGCGGCGCTTGGTTATT CCTCGACGTACTTACTACCTCGGACATGTCCTCTTACGTTCAGCGAGGGGCTGCAGAGGTGTGGTGTCTTCCCGCCGACG AGCCGGGAGGTCAGTGGCGCCGGATCGTGATGCGTGAACTGGGGCACCAGATCTATGCCGAGCACTGGTACGACAGGTTC CTGTTTCGGGTGGATGATGCTGGACCGTACTGGCGGCTGGTGAGTGCGCCGATAGATGATCCCTCACCGTCGCGGTGGGA GGAGGTCGTGCCGCATCGAGCGGGCGTGACGATCGACGAGATCCACGTGCTCGAACAGCACTTGGTCCTCCTGGAACGAG AAGGCCTCCGTCCTCGCCTGATCTCGCGTAATCGAAGCGGGCGGGTTGGCGCTGTGATCGTTCCCGACGAGCCGAGCTGC ACTATAAGGGTCGGCCTGTCGGCCGGTGGTTGCTATTCGGCCGCACGACATCCGTTCCGAAGCTCGAAGTTGACCTACTC GGTTAGCTCGTTTGTGACGCCCGACACCTTCATCGAGCATGATTTCGCCAACGACCGATCGGTGGTCCTGTGCGAGGCCC GCGTTCCCGGGTATGATGCCACTCAATACCTTGCAACGGTCGTAATGGCAGAGGCTGAAGACGGGGTGCAGGTCCCGATC TCGTTGGTCGCGCGGCGCGATCGAACGAGCCCTGGACCAGTGTTATTGAGTGTGTACGGCTGCTACGGGATACCGAGATT GCCCTCGTTCCTCGCTTGGCCCTCTTCCATGACGGCGCGTTTGAGCCTGCTCGACCGCGAAGTAGCTTTCGGCATCGTGC ACGTGCGAGGGGGTGGCGAGCTCGGACGCCCATGGCACGACGCGGCTACCCGCGACCAAAAGCGCATTACTCACACAGAT CTCATCTCCGCTACCGAGGGGCTTATTGAGCGTGGGTTCGCCACCCGCGACGGCGTCGTTATTGAGGGAAAGAGTGGTGG CGGGGGTACGGTGCTTGCAACGGCCGTCTTTCGGCCCAACTTGTTCCGCGCCGTGGTTGCCGAGGTCCCACTGGCCGACA TCATAGATACCCAGCTGGACTCGACAATGCCGTACACGCTAAAGGAAACGGCAGAGTATGGAGATCCCCAGGACGCCTAC GAGTATCGGTATCTGCGCAGCTACGACCCGTATTACAACCTCAGCCCCGAGCGATCTCTTCCACCTACATACGTCGACGC CGCGCTCGACGATGGCCAAGTGATCTATTACCAACCTGCTCGTTACGTGGCGCAGCGTCGGTCCTGCGCGACCGATCGCG ACCCCGATCTTGTCTTCCGCATCCGGATGGTGGGCGGACACAGCGGCCCGTCACATGGGCCTGGCATAGCGGAACAAGCA GCTTTTCGCATGGCCTGGGTTCTCGACCAGCTCCGAAGTCACGCTCCGCCCCCATCAAGGAAGGCGCGCTCCGCCGCCAG AAGGTCCACCGATCCAGTGAGATAG
Upstream 100 bases:
>100_bases ACCTCCTTTGACAACTGACGAGCAGACGCTTCGACGTGGTCTGGACATCCTGCACAAATCTGTGGCCGCAAGCATCTAAA GCGGATCGCGACTCCGGTTC
Downstream 100 bases:
>100_bases TGGGCTGTGTCACTGTAGCTGGAGTGGCCGAGATAGGTGGCAGCAACGGCAGCAGCGCCAGGGCGTTGGCGCGTTGTTGA TGCTCAGGCGGGTCACGGCA
Product: S9A-type peptidase BxrF
Products: Hydrolyzed protein [C]
Alternate protein names: NA
Number of amino acids: Translated: 754; Mature: 753
Protein sequence:
>754_residues MGGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRYGWLRDRENPDVRAYLEAENS YAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYW LGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEHWYDRF LFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSC TIRVGLSAGGCYSAARHPFRSSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPWHDAATRDQKRITHTD LISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAY EYRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR
Sequences:
>Translated_754_residues MGGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRYGWLRDRENPDVRAYLEAENS YAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYW LGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEHWYDRF LFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSC TIRVGLSAGGCYSAARHPFRSSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPWHDAATRDQKRITHTD LISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAY EYRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR >Mature_753_residues GGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRYGWLRDRENPDVRAYLEAENSY AEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYWL GVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRGN SEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEHWYDRFL FRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSCT IRVGLSAGGCYSAARHPFRSSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPIS LVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPWHDAATRDQKRITHTDL ISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYE YRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQAA FRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR
Specific function: Cleaves Peptide Bonds On The C-Terminal Side Of Lysyl And Argininyl Residues. [C]
COG id: COG1770
COG function: function code E; Protease II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9A family
Homologues:
Organism=Homo sapiens, GI41349456, Length=731, Percent_Identity=21.8878248974008, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI284172438, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=8e-23, Organism=Homo sapiens, GI284172431, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=8e-23, Organism=Homo sapiens, GI284172420, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=9e-23, Organism=Homo sapiens, GI284172413, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=9e-23, Organism=Homo sapiens, GI70778815, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=9e-23, Organism=Homo sapiens, GI108860686, Length=265, Percent_Identity=28.3018867924528, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI108860692, Length=297, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=7e-18, Organism=Escherichia coli, GI1788150, Length=701, Percent_Identity=29.6718972895863, Blast_Score=289, Evalue=3e-79, Organism=Drosophila melanogaster, GI24583414, Length=692, Percent_Identity=22.1098265895954, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI221510989, Length=720, Percent_Identity=22.5, Blast_Score=143, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QF_RHISN (P55627)
Other databases:
- EMBL: U00090 - RefSeq: NP_444033.1 - ProteinModelPortal: P55627 - MEROPS: S09.010 - GeneID: 962412 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01920 - HOGENOM: HBG293434 - ProtClustDB: CLSK506527 - GO: GO:0006508 - InterPro: IPR001375 - InterPro: IPR002470 - InterPro: IPR004106 - PANTHER: PTHR11757 - PRINTS: PR00862
Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N; SSF50993 Peptidase_S9A_N
EC number: 3.4.21.83 [C]
Molecular weight: Translated: 84715; Mature: 84584
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: ACT_SITE 585-585 ACT_SITE 707-707
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRY CCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEECCC GWLRDRENPDVRAYLEAENSYAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDY CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH FQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLI HCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEE GAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG CCCEEEEEEECCCCCHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCC NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWR CCEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHH RIVMRELGHQIYAEHWYDRFLFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDE HHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHH IHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSCTIRVGLSAGGCYSAARHPFR HHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCCC SSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI CCCEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCH SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGE HHHHHCCCCCCCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHEEEEEEEEEECCCC LGRPWHDAATRDQKRITHTDLISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPN CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEECCCH LFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSL HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC PPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA CCHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure GGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRY CCHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEECCC GWLRDRENPDVRAYLEAENSYAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDY CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH FQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLI HCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEE GAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG CCCEEEEEEECCCCCHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCC NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWR CCEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHH RIVMRELGHQIYAEHWYDRFLFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDE HHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHH IHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSCTIRVGLSAGGCYSAARHPFR HHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCCC SSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI CCCEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCH SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGE HHHHHCCCCCCCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHEEEEEEEEEECCCC LGRPWHDAATRDQKRITHTDLISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPN CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEECCCH LFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSL HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC PPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA CCHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Ca2+ [C]
Kcat value (1/min): 11820 [C]
Specific activity: NA
Km value (mM): 0.23 {tosyl-Arg} 0.33 {N-benzyloxycarbonyl-Lys} 0.31 {N-benzyloxycarbonyl-Lys} 0.92 {benzoyl-Lys} 0.6 {N-benzoyl-Arg} 0.5 {benzoyl-Arg} 0.48 {benzoyl-Arg} 0.25 {benzoyl-Arg} 80 {acetyl-tyrosine} 0.47 {tosyl-Lys-methyl} [C]
Substrates: Protein; H2O [C]
Specific reaction: Protein + H2O = hydrolyzed protein [C]
General reaction: Peptide bond hydrolysis [C]
Inhibitor: Antipain; Aromaticamidines; Benzamidine; Co2+; DFP; Fe2+; Hg2+; L-Arginine; Leupeptin sulfhydryl agents, trypsin inhibitors, 1, 10-phenanthroline; p-Aminobenzamidine; Tosyl -Leuchloromethyl ketone; Zn2+ [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424