Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519911
GI number: 16519911
Start: 249147
End: 249881
Strand: Direct
Name: Not Available
Synonym: NGR_a01940
Alternate gene names: NA
Gene position: 249147-249881 (Clockwise)
Preceding gene: 16519913
Following gene: 16519910
Centisome position: 46.47
GC content: 55.51
Gene sequence:
>735_bases ATGCGCGAAGTTCAGAGCTTGGGGATTGTTATTACCGACCCACAACAGATGATCTCGACGTGTAAGAGGCGCTTTTCAGC AGCTCTAGGTGTGGTTGGCGGCACGTCGGTTCTGCGACGCTTATTATCTCAATTGGCACACGCTGGGGTGCAGAGGACGA TGGTGCTGGCCCGAGAAACTTTAGGCGAAATAGCCGGCGACCTCGGTGGCGAGCTGAATGGGATGGAGCTCTGCTTACGC GCTCTGCCCAGGCCGAATGCCGGACGTCTCGTGGACGCAGCAACGGCAAATGAGATCGCCCACGTTGATGGCGACGTGCT GGTGTTCACGGAGAATTTGGTCATAGACTTCGATGTGATCGAACGCCTGTTGCGGTCGCAAGACCGCAATATTGCCGTAG TCAGCAAAACACAGGGCGGACGATCCCTGCGCGTACTGGCGGACGATGCGCTGCGCCTTACAGCAGTGCTACCCGACCGC CCTTCAAGCCAGCATCACGCCTCTGCAGATTGGAATCTAATGGGTGTTTATAAGTTTGACCCTGCATTCGTTCGGGCCAT TGCTAGAAACCGCCGGTATCGCGCGCATGACGATCTCGAGTTCTTTGAAACCGCTTTGGGTATTCATGCACACCCGATGC ACCTCATGTGTGCTGAACCTCAACGTGTGAGAACGGTGAACGATGCAGTTGATCTAGCAGCGGCCAATTACGCGTTCAGG TCCAGTTCCGATTAA
Upstream 100 bases:
>100_bases CCGACTTCGAAGTCGCACCAATACTATTTGCCCTGGTAGTAGATAGAACGCTCGCCCTCAGATAGATTTTGAGGAAGTTC TCAGTCCGAGGATCGACGAA
Downstream 100 bases:
>100_bases CTACCTACGGCTGAACGCACGCATGGGCACTGACCAAAACCTGCCGAGGCGCTTCCTTGTGAACAGGGCGCCTTTTCAAG ACTCCTCATGGCACGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARETLGEIAGDLGGELNGMELCLR ALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVIERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDR PSSQHHASADWNLMGVYKFDPAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR SSSD
Sequences:
>Translated_244_residues MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARETLGEIAGDLGGELNGMELCLR ALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVIERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDR PSSQHHASADWNLMGVYKFDPAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR SSSD >Mature_244_residues MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARETLGEIAGDLGGELNGMELCLR ALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVIERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDR PSSQHHASADWNLMGVYKFDPAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR SSSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QD_RHISN (P55625)
Other databases:
- EMBL: U00090 - RefSeq: NP_444031.1 - ProteinModelPortal: P55625 - GeneID: 962214 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01940
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26792; Mature: 26792
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARET CCCCHHCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LGEIAGDLGGELNGMELCLRALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVI HHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEECHHHCHHHCCCCCEEEEECCEEEEHHHH ERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDRPSSQHHASADWNLMGVYKFD HHHHHCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC PAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC SSSD CCCC >Mature Secondary Structure MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARET CCCCHHCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LGEIAGDLGGELNGMELCLRALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVI HHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEECHHHCHHHCCCCCEEEEECCEEEEHHHH ERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDRPSSQHHASADWNLMGVYKFD HHHHHCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC PAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC SSSD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424