Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16519911

GI number: 16519911

Start: 249147

End: 249881

Strand: Direct

Name: Not Available

Synonym: NGR_a01940

Alternate gene names: NA

Gene position: 249147-249881 (Clockwise)

Preceding gene: 16519913

Following gene: 16519910

Centisome position: 46.47

GC content: 55.51

Gene sequence:

>735_bases
ATGCGCGAAGTTCAGAGCTTGGGGATTGTTATTACCGACCCACAACAGATGATCTCGACGTGTAAGAGGCGCTTTTCAGC
AGCTCTAGGTGTGGTTGGCGGCACGTCGGTTCTGCGACGCTTATTATCTCAATTGGCACACGCTGGGGTGCAGAGGACGA
TGGTGCTGGCCCGAGAAACTTTAGGCGAAATAGCCGGCGACCTCGGTGGCGAGCTGAATGGGATGGAGCTCTGCTTACGC
GCTCTGCCCAGGCCGAATGCCGGACGTCTCGTGGACGCAGCAACGGCAAATGAGATCGCCCACGTTGATGGCGACGTGCT
GGTGTTCACGGAGAATTTGGTCATAGACTTCGATGTGATCGAACGCCTGTTGCGGTCGCAAGACCGCAATATTGCCGTAG
TCAGCAAAACACAGGGCGGACGATCCCTGCGCGTACTGGCGGACGATGCGCTGCGCCTTACAGCAGTGCTACCCGACCGC
CCTTCAAGCCAGCATCACGCCTCTGCAGATTGGAATCTAATGGGTGTTTATAAGTTTGACCCTGCATTCGTTCGGGCCAT
TGCTAGAAACCGCCGGTATCGCGCGCATGACGATCTCGAGTTCTTTGAAACCGCTTTGGGTATTCATGCACACCCGATGC
ACCTCATGTGTGCTGAACCTCAACGTGTGAGAACGGTGAACGATGCAGTTGATCTAGCAGCGGCCAATTACGCGTTCAGG
TCCAGTTCCGATTAA

Upstream 100 bases:

>100_bases
CCGACTTCGAAGTCGCACCAATACTATTTGCCCTGGTAGTAGATAGAACGCTCGCCCTCAGATAGATTTTGAGGAAGTTC
TCAGTCCGAGGATCGACGAA

Downstream 100 bases:

>100_bases
CTACCTACGGCTGAACGCACGCATGGGCACTGACCAAAACCTGCCGAGGCGCTTCCTTGTGAACAGGGCGCCTTTTCAAG
ACTCCTCATGGCACGAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARETLGEIAGDLGGELNGMELCLR
ALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVIERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDR
PSSQHHASADWNLMGVYKFDPAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR
SSSD

Sequences:

>Translated_244_residues
MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARETLGEIAGDLGGELNGMELCLR
ALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVIERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDR
PSSQHHASADWNLMGVYKFDPAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR
SSSD
>Mature_244_residues
MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARETLGEIAGDLGGELNGMELCLR
ALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVIERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDR
PSSQHHASADWNLMGVYKFDPAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR
SSSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4QD_RHISN (P55625)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444031.1
- ProteinModelPortal:   P55625
- GeneID:   962214
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01940

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26792; Mature: 26792

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARET
CCCCHHCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGEIAGDLGGELNGMELCLRALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVI
HHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEECHHHCHHHCCCCCEEEEECCEEEEHHHH
ERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDRPSSQHHASADWNLMGVYKFD
HHHHHCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC
PAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
SSSD
CCCC
>Mature Secondary Structure
MREVQSLGIVITDPQQMISTCKRRFSAALGVVGGTSVLRRLLSQLAHAGVQRTMVLARET
CCCCHHCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGEIAGDLGGELNGMELCLRALPRPNAGRLVDAATANEIAHVDGDVLVFTENLVIDFDVI
HHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEECHHHCHHHCCCCCEEEEECCEEEEHHHH
ERLLRSQDRNIAVVSKTQGGRSLRVLADDALRLTAVLPDRPSSQHHASADWNLMGVYKFD
HHHHHCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC
PAFVRAIARNRRYRAHDDLEFFETALGIHAHPMHLMCAEPQRVRTVNDAVDLAAANYAFR
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
SSSD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424