Click here to switch to the map view.

The map label for this gene is y4nM

Identifier: 16519876

GI number: 16519876

Start: 299544

End: 301094

Strand: Direct

Name: y4nM

Synonym: NGR_a02290

Alternate gene names: NA

Gene position: 299544-301094 (Clockwise)

Preceding gene: 16519877

Following gene: 16519875

Centisome position: 55.87

GC content: 54.87

Gene sequence:

>1551_bases
GTGCCAGGCTCACCACCTCCCGAAAATGCGCCCGCCGTACTTTGGACCTGTTTCGGGGCGTCCGGCTGGAGGATGCTACT
GATGAAACAGCGGCGAAATGAAATGAAGGTGCTTGATCTGGACTGCTTTGATCGTAAGTTGCCTTTGATTTGTGACCTGG
ATGGCACACTGATAAAATCAGACAGTCTTCACGAGAACCTGTTTGATGCCTTCTTCCATTCCCCGCAGCAGTTGCTTCGC
ACGATTCCAAACTGGTTTAAGGGGCGCCCGGCCCTGAAGGAAGCTCTGGCGAAAGTCCGTTCGGTTGAGCCGCAGGCGCT
TCCCTACCGTGAACAGATGCTTGACCTGATACGCCGCGCGAGATCTGCCGGGCGTGAAACCTATCTCGTTACGGCAGCTG
ATCAGAGCATAGCAGATGATATCATTTCTCATCTCGGCGGTTTCGACGGTGCCAAGGGGAGTAGTGGCTCACTGAACCTC
AAGAGCCGGCGCAAACTGCAATGGCTTCAGGAGAGCTTTCCCGAGGGATTCATCTATGCAGGCGACAGTGCCGCCGACCT
GCCGATCTGGGAGGCGGCTTCCGGAGCCGTTCTGGTTGGCGACGGAGTAAAGTTCGAAAGCAAACTCCGTGAGGCTGGCG
TCGAGGTTAGGACGCTCAGTCCTGAAAAAAGTCATCCGGTGAAGGATTGGCTTTCTGAACTCAGGATACACCAGTGGTCG
AAAAATGTGCTGATCTTCGTGCCTCTGTTTCTCGGCCGCATTGCGGACGACTTCCATGCTGTACTGAAAACGACGTTCGG
TTTTCTCGCTTTCGGCCTGATTGTTTCGGCAACCTATATTATCAACGATCTGGCTGATCTGGAGGCGGACCGGGCGCATG
CGACCAAACGCTTCCGGGCAATCGCTGCAGGCCGAATCAGTGTCATGAACGGCTTTCTGGCGTGTCTGGTTATGCTTGCT
ACAGGCATTGGGACGGCCCTCCTTTTGGACCATCAATTCGCGCTGGTTGCTTCTGTCTATCTCGCGCTGACACTGGCCTA
TTCATTCCGCCTGAAGCGTGTTGCGTTACTCGATGTGACAGTTATTGGGGCGTTATTCACCTTAAGGATTGTCATGGGTC
AGGTGCTGAACGGCCTGGCATTCTCCCCTTGGCTTTTTTCGTTTTCAGTAATGTTCTTCATTTCGCTGGCTCTGGCAAAG
CGTCATGTGGAAGCAATGCGCGCGTGCTCAAATCGCAAGGACACCATCGAAGGGCGCGGATACTTGCCTGGCGACTGGCC
GCTAACCTTGGGCCATGGCCTTGCGTCCGCTTCGGCCTCGATCGTCATCATGCTGCTTTTCCTCGCACTCGAGCCCAGAG
TGACGCACCTATATCATAATCCAGCATGGCTTTATGTTGCGCCGCTCGGCGTTTCCATTTGGCTGCAAAGGATCTGGCTC
CTCAGTCATCGTATGGAATTGCACGACGACCCTATTGTCTTCGCGCTCAACGACAAGACCAGCTGGTTTATCGGCGCCCT
CATCGCGTCGGCGTTCGTGATGGCCATGTGA

Upstream 100 bases:

>100_bases
GCGTCTGGAGATACCGACCCCGGTGGGGATGGATAGCTTAGCGGTCGTTTGAGAGAGGCAAAAAGCAGATGTCCTCGTCA
GCTCATATACCAGAACGCGC

Downstream 100 bases:

>100_bases
AATTAAGCAAATGCCAATATGCAAGAGATAACCCCTATAACTTTGAATGCGCCGCTCGTACTCCTAACTGGAGCTGCCGG
CTGGTTGGGCGGGCGGGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MPGSPPPENAPAVLWTCFGASGWRMLLMKQRRNEMKVLDLDCFDRKLPLICDLDGTLIKSDSLHENLFDAFFHSPQQLLR
TIPNWFKGRPALKEALAKVRSVEPQALPYREQMLDLIRRARSAGRETYLVTAADQSIADDIISHLGGFDGAKGSSGSLNL
KSRRKLQWLQESFPEGFIYAGDSAADLPIWEAASGAVLVGDGVKFESKLREAGVEVRTLSPEKSHPVKDWLSELRIHQWS
KNVLIFVPLFLGRIADDFHAVLKTTFGFLAFGLIVSATYIINDLADLEADRAHATKRFRAIAAGRISVMNGFLACLVMLA
TGIGTALLLDHQFALVASVYLALTLAYSFRLKRVALLDVTVIGALFTLRIVMGQVLNGLAFSPWLFSFSVMFFISLALAK
RHVEAMRACSNRKDTIEGRGYLPGDWPLTLGHGLASASASIVIMLLFLALEPRVTHLYHNPAWLYVAPLGVSIWLQRIWL
LSHRMELHDDPIVFALNDKTSWFIGALIASAFVMAM

Sequences:

>Translated_516_residues
MPGSPPPENAPAVLWTCFGASGWRMLLMKQRRNEMKVLDLDCFDRKLPLICDLDGTLIKSDSLHENLFDAFFHSPQQLLR
TIPNWFKGRPALKEALAKVRSVEPQALPYREQMLDLIRRARSAGRETYLVTAADQSIADDIISHLGGFDGAKGSSGSLNL
KSRRKLQWLQESFPEGFIYAGDSAADLPIWEAASGAVLVGDGVKFESKLREAGVEVRTLSPEKSHPVKDWLSELRIHQWS
KNVLIFVPLFLGRIADDFHAVLKTTFGFLAFGLIVSATYIINDLADLEADRAHATKRFRAIAAGRISVMNGFLACLVMLA
TGIGTALLLDHQFALVASVYLALTLAYSFRLKRVALLDVTVIGALFTLRIVMGQVLNGLAFSPWLFSFSVMFFISLALAK
RHVEAMRACSNRKDTIEGRGYLPGDWPLTLGHGLASASASIVIMLLFLALEPRVTHLYHNPAWLYVAPLGVSIWLQRIWL
LSHRMELHDDPIVFALNDKTSWFIGALIASAFVMAM
>Mature_515_residues
PGSPPPENAPAVLWTCFGASGWRMLLMKQRRNEMKVLDLDCFDRKLPLICDLDGTLIKSDSLHENLFDAFFHSPQQLLRT
IPNWFKGRPALKEALAKVRSVEPQALPYREQMLDLIRRARSAGRETYLVTAADQSIADDIISHLGGFDGAKGSSGSLNLK
SRRKLQWLQESFPEGFIYAGDSAADLPIWEAASGAVLVGDGVKFESKLREAGVEVRTLSPEKSHPVKDWLSELRIHQWSK
NVLIFVPLFLGRIADDFHAVLKTTFGFLAFGLIVSATYIINDLADLEADRAHATKRFRAIAAGRISVMNGFLACLVMLAT
GIGTALLLDHQFALVASVYLALTLAYSFRLKRVALLDVTVIGALFTLRIVMGQVLNGLAFSPWLFSFSVMFFISLALAKR
HVEAMRACSNRKDTIEGRGYLPGDWPLTLGHGLASASASIVIMLLFLALEPRVTHLYHNPAWLYVAPLGVSIWLQRIWLL
SHRMELHDDPIVFALNDKTSWFIGALIASAFVMAM

Specific function: Possible permease/transporter

COG id: COG0382

COG function: function code H; 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4NM_RHISN (P55585)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443996.1
- ProteinModelPortal:   P55585
- GeneID:   962380
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a02290
- HOGENOM:   HBG452997
- ProtClustDB:   PRK08238
- GO:   GO:0009877
- GO:   GO:0006810
- InterPro:   IPR023214
- InterPro:   IPR000537
- Gene3D:   G3DSA:3.40.50.1000

Pfam domain/function: PF01040 UbiA; SSF56784 SSF56784

EC number: NA

Molecular weight: Translated: 57306; Mature: 57174

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbd79b2c)-; HASH(0xbb4c5ac)-; HASH(0xbf7d35c)-; HASH(0xaf19f1c)-; HASH(0xb88034c)-; HASH(0xbe74a74)-; HASH(0xc7329d0)-; HASH(0xbe6dd60)-; HASH(0xb73b5ac)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSPPPENAPAVLWTCFGASGWRMLLMKQRRNEMKVLDLDCFDRKLPLICDLDGTLIKS
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHCCCCCEEECCCCCEECC
DSLHENLFDAFFHSPQQLLRTIPNWFKGRPALKEALAKVRSVEPQALPYREQMLDLIRRA
CCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
RSAGRETYLVTAADQSIADDIISHLGGFDGAKGSSGSLNLKSRRKLQWLQESFPEGFIYA
HHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
GDSAADLPIWEAASGAVLVGDGVKFESKLREAGVEVRTLSPEKSHPVKDWLSELRIHQWS
CCCCCCCCCEECCCCCEEEECCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCC
KNVLIFVPLFLGRIADDFHAVLKTTFGFLAFGLIVSATYIINDLADLEADRAHATKRFRA
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
IAAGRISVMNGFLACLVMLATGIGTALLLDHQFALVASVYLALTLAYSFRLKRVALLDVT
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGALFTLRIVMGQVLNGLAFSPWLFSFSVMFFISLALAKRHVEAMRACSNRKDTIEGRG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YLPGDWPLTLGHGLASASASIVIMLLFLALEPRVTHLYHNPAWLYVAPLGVSIWLQRIWL
CCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEEHHHHHHHHHHHHH
LSHRMELHDDPIVFALNDKTSWFIGALIASAFVMAM
HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
PGSPPPENAPAVLWTCFGASGWRMLLMKQRRNEMKVLDLDCFDRKLPLICDLDGTLIKS
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHCCCCCEEECCCCCEECC
DSLHENLFDAFFHSPQQLLRTIPNWFKGRPALKEALAKVRSVEPQALPYREQMLDLIRRA
CCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
RSAGRETYLVTAADQSIADDIISHLGGFDGAKGSSGSLNLKSRRKLQWLQESFPEGFIYA
HHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
GDSAADLPIWEAASGAVLVGDGVKFESKLREAGVEVRTLSPEKSHPVKDWLSELRIHQWS
CCCCCCCCCEECCCCCEEEECCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCC
KNVLIFVPLFLGRIADDFHAVLKTTFGFLAFGLIVSATYIINDLADLEADRAHATKRFRA
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
IAAGRISVMNGFLACLVMLATGIGTALLLDHQFALVASVYLALTLAYSFRLKRVALLDVT
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGALFTLRIVMGQVLNGLAFSPWLFSFSVMFFISLALAKRHVEAMRACSNRKDTIEGRG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YLPGDWPLTLGHGLASASASIVIMLLFLALEPRVTHLYHNPAWLYVAPLGVSIWLQRIWL
CCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEEHHHHHHHHHHHHH
LSHRMELHDDPIVFALNDKTSWFIGALIASAFVMAM
HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424