Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519877
GI number: 16519877
Start: 296814
End: 298595
Strand: Direct
Name: Not Available
Synonym: NGR_a02280
Alternate gene names: 16519877
Gene position: 296814-298595 (Clockwise)
Preceding gene: 16519880
Following gene: 16519876
Centisome position: 55.36
GC content: 59.82
Gene sequence:
>1782_bases GTGAACGTTCTTAAGCGCGGCTCGGATCAGGACAATTGGTGGCAGGCCTATCCTGGCTTGTATGCCCGGGAGTTGGCGGC CTATGAGGGGCACGGCGCCTCTCACCGGCCGTTAATCCAACAGGACGGCACCTTGATCCTCGAGGTCCTTTGGCCGATGG ACAGTGCCGGGTCCATCCGACTTAATGTCGGCTACTCGCCGCTGCATCCGTTCTGCCGACCCTCGATATCCGCGCCTGAA CTGCAACTCGAGCGGCATCAGAATCCCTTTACGAGGGATTTGTGCCTGCTGACGCAGGACTCTGCCCAGTGGTACCCCCA TCAAATGGTCGCGGACTTCATAGCCGAGCGGTTATCGCAGGTCCTGCAAGTCATGACACTGCGGCGGAACGAGCAGTGGA GTGAGGCAGCCAGCCTCGAAGAACAAGCTCCCGACCCTGTAACGCCATATCATATGCATGTTGCCGAGGAGTATTCGGCG GTCTTTTTTGATGGGCAGCAGACCGTTCCAAATGCCCCCCTCGGAACCGCAGTTTTCCTGCTCCAGGACCGCCTGGAGCG AGGAAGGTCTCCACCGTTTCAAGCCATTCTGAGCAAAGTGGAGCCATTGAGCGGCACCTGGATGGCGAAGCCCTTCGATC TCCCGAAACGGGCCGGCCCATGGAAAAACGTCATCGGGCGCTGGATACGCCTGGAGCCGCCATTCCCCGAGGCCCCGGAG GAGATTTTGGCGGCGGCCGAGAAGGCGATAGAGCGACAATCGGCCCTCTTCCCCGCTCACCTGAAGAAGCTCGGATCAAT TGCCGACGACGATCTATCGATTACCGCCGTGGTTTTTCAGGAGGAGCTTTCCTACGGCCCTGATAACAAGGGCAACGGTT GGTTCTTTCTCGTCAGTCGGCGCGTGCCTGGCAGCCGCCGGCGACAGGTTTCCTTGGTGCGCGGATACCGTCTGTCGAGC GATATGCTCTCGCGACTGCCTGTCGCGAGTGCTTTGAAAAGCAAAAAGGTTGTTCTCGTAGGGTGCGGCGCCATCGGCAG TTTCGCTGCAGTCGAGCTTGCGCGCTCAGGCGTCGGTCAGCTGACGATCATCGATTTCGATCTCGTCGAGCCTGGCAACA CGGTCAGATGGGCGCTGGGTCGTTCGGTGTGGGGCCTGCCAAAGACAACCGCGCTGCACGATTTCCTCTATCACAACTAC CCTTGGACAAATGTCGGGCGTGGACACGCTAAAGTGGGCTCAGCAATCTCGAATGTGGACGACGTCCGCAAACTCGAGGG GAATCCCATGCGTTGGCTTCGAGCATTGATCGAGGACGCCGACATTGTGGTAGACACTTCGGCCTCGACCGAGTGTCAGG GCGCCTTGGCCTACATGTGCCGTAGCATAGGAAAGCGGTACGTACTCGGCCACGCAACCGAAGGCGCGGCCGGAGGCGTT GTGGCGAGATTCAAACCGGGAGCCCCGGGTTGTTATGTCTGCTTGCAGCAGCATTGGTCCGGCAAGACGCTCCCGCTCCC AACTATTGACAGCTCGGGCACGATAGTTCCGACCGGCTGCAACGCGCCAACGTTCACCGGAGGCGCCTTTGACCTGCAGG AAGTGTCGATGGAAGTTGTACGCAGCACGATCGGACTGCTCGCCCCGGACGTGTACGATTCGGGTGACTGGCAGCTTTCC ATTCTTGATCTGACCGAAAATGGCCGCCGCATTCTCCCGCGGTGGAAAGCCGAGACGATCGCACCACATTCGAGCTGCAG CTGCGGAGCGTCACAGGGATGA
Upstream 100 bases:
>100_bases CCGACGTCCCGAAGGGGCCGCCCAGCCATACTCCGGGTCGCCCCGATGGCCCGCCAGTGCCCTCTCACCCCCCGTCCCAC CGGCCGGTCGGCTGACGGAG
Downstream 100 bases:
>100_bases CAATTTGGTTGGGGCGCGACGCAGCTCAAGTAATAATCGAACAGGCCAACATATTCTTTCCGCTCGAGACCGGCGGTGTT CTCCTCGGTTGGAGAGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MNVLKRGSDQDNWWQAYPGLYARELAAYEGHGASHRPLIQQDGTLILEVLWPMDSAGSIRLNVGYSPLHPFCRPSISAPE LQLERHQNPFTRDLCLLTQDSAQWYPHQMVADFIAERLSQVLQVMTLRRNEQWSEAASLEEQAPDPVTPYHMHVAEEYSA VFFDGQQTVPNAPLGTAVFLLQDRLERGRSPPFQAILSKVEPLSGTWMAKPFDLPKRAGPWKNVIGRWIRLEPPFPEAPE EILAAAEKAIERQSALFPAHLKKLGSIADDDLSITAVVFQEELSYGPDNKGNGWFFLVSRRVPGSRRRQVSLVRGYRLSS DMLSRLPVASALKSKKVVLVGCGAIGSFAAVELARSGVGQLTIIDFDLVEPGNTVRWALGRSVWGLPKTTALHDFLYHNY PWTNVGRGHAKVGSAISNVDDVRKLEGNPMRWLRALIEDADIVVDTSASTECQGALAYMCRSIGKRYVLGHATEGAAGGV VARFKPGAPGCYVCLQQHWSGKTLPLPTIDSSGTIVPTGCNAPTFTGGAFDLQEVSMEVVRSTIGLLAPDVYDSGDWQLS ILDLTENGRRILPRWKAETIAPHSSCSCGASQG
Sequences:
>Translated_593_residues MNVLKRGSDQDNWWQAYPGLYARELAAYEGHGASHRPLIQQDGTLILEVLWPMDSAGSIRLNVGYSPLHPFCRPSISAPE LQLERHQNPFTRDLCLLTQDSAQWYPHQMVADFIAERLSQVLQVMTLRRNEQWSEAASLEEQAPDPVTPYHMHVAEEYSA VFFDGQQTVPNAPLGTAVFLLQDRLERGRSPPFQAILSKVEPLSGTWMAKPFDLPKRAGPWKNVIGRWIRLEPPFPEAPE EILAAAEKAIERQSALFPAHLKKLGSIADDDLSITAVVFQEELSYGPDNKGNGWFFLVSRRVPGSRRRQVSLVRGYRLSS DMLSRLPVASALKSKKVVLVGCGAIGSFAAVELARSGVGQLTIIDFDLVEPGNTVRWALGRSVWGLPKTTALHDFLYHNY PWTNVGRGHAKVGSAISNVDDVRKLEGNPMRWLRALIEDADIVVDTSASTECQGALAYMCRSIGKRYVLGHATEGAAGGV VARFKPGAPGCYVCLQQHWSGKTLPLPTIDSSGTIVPTGCNAPTFTGGAFDLQEVSMEVVRSTIGLLAPDVYDSGDWQLS ILDLTENGRRILPRWKAETIAPHSSCSCGASQG >Mature_593_residues MNVLKRGSDQDNWWQAYPGLYARELAAYEGHGASHRPLIQQDGTLILEVLWPMDSAGSIRLNVGYSPLHPFCRPSISAPE LQLERHQNPFTRDLCLLTQDSAQWYPHQMVADFIAERLSQVLQVMTLRRNEQWSEAASLEEQAPDPVTPYHMHVAEEYSA VFFDGQQTVPNAPLGTAVFLLQDRLERGRSPPFQAILSKVEPLSGTWMAKPFDLPKRAGPWKNVIGRWIRLEPPFPEAPE EILAAAEKAIERQSALFPAHLKKLGSIADDDLSITAVVFQEELSYGPDNKGNGWFFLVSRRVPGSRRRQVSLVRGYRLSS DMLSRLPVASALKSKKVVLVGCGAIGSFAAVELARSGVGQLTIIDFDLVEPGNTVRWALGRSVWGLPKTTALHDFLYHNY PWTNVGRGHAKVGSAISNVDDVRKLEGNPMRWLRALIEDADIVVDTSASTECQGALAYMCRSIGKRYVLGHATEGAAGGV VARFKPGAPGCYVCLQQHWSGKTLPLPTIDSSGTIVPTGCNAPTFTGGAFDLQEVSMEVVRSTIGLLAPDVYDSGDWQLS ILDLTENGRRILPRWKAETIAPHSSCSCGASQG
Specific function: Involved In The Biosynthesis Of A Demolybdo Cofactor (Molybdopterin), Necessary For Molybdoenzymes. Plays A Role In The Activation Of The Small Subunit Of The Molybdopterin Converting Factor (Moad). [C]
COG id: COG0476
COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787048, Length=243, Percent_Identity=28.3950617283951, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4OA_RHISN (P55586)
Other databases:
- EMBL: U00090 - RefSeq: NP_443997.1 - ProteinModelPortal: P55586 - GeneID: 962203 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a02280 - ProtClustDB: CLSK563539 - GO: GO:0005488 - InterPro: IPR009036 - InterPro: IPR016040 - InterPro: IPR000594 - Gene3D: G3DSA:3.40.50.720
Pfam domain/function: PF00899 ThiF; SSF69572 MoeB
EC number: NA
Molecular weight: Translated: 65217; Mature: 65217
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVLKRGSDQDNWWQAYPGLYARELAAYEGHGASHRPLIQQDGTLILEVLWPMDSAGSIR CCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEECCCCCCCEEE LNVGYSPLHPFCRPSISAPELQLERHQNPFTRDLCLLTQDSAQWYPHQMVADFIAERLSQ EECCCCCCCHHHCCCCCCCCHHHHHCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHH VLQVMTLRRNEQWSEAASLEEQAPDPVTPYHMHVAEEYSAVFFDGQQTVPNAPLGTAVFL HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEHHHHCCEEEECCCCCCCCCCCHHHHHH LQDRLERGRSPPFQAILSKVEPLSGTWMAKPFDLPKRAGPWKNVIGRWIRLEPPFPEAPE HHHHHHHCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHCCEEECCCCCCCCHH EILAAAEKAIERQSALFPAHLKKLGSIADDDLSITAVVFQEELSYGPDNKGNGWFFLVSR HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCEEEEEEEE RVPGSRRRQVSLVRGYRLSSDMLSRLPVASALKSKKVVLVGCGAIGSFAAVELARSGVGQ CCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCE LTIIDFDLVEPGNTVRWALGRSVWGLPKTTALHDFLYHNYPWTNVGRGHAKVGSAISNVD EEEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH DVRKLEGNPMRWLRALIEDADIVVDTSASTECQGALAYMCRSIGKRYVLGHATEGAAGGV HHHHHCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCE VARFKPGAPGCYVCLQQHWSGKTLPLPTIDSSGTIVPTGCNAPTFTGGAFDLQEVSMEVV EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH RSTIGLLAPDVYDSGDWQLSILDLTENGRRILPRWKAETIAPHSSCSCGASQG HHHHHHHCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNVLKRGSDQDNWWQAYPGLYARELAAYEGHGASHRPLIQQDGTLILEVLWPMDSAGSIR CCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCHHCCCCEEEEEECCCCCCCEEE LNVGYSPLHPFCRPSISAPELQLERHQNPFTRDLCLLTQDSAQWYPHQMVADFIAERLSQ EECCCCCCCHHHCCCCCCCCHHHHHCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHH VLQVMTLRRNEQWSEAASLEEQAPDPVTPYHMHVAEEYSAVFFDGQQTVPNAPLGTAVFL HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEHHHHCCEEEECCCCCCCCCCCHHHHHH LQDRLERGRSPPFQAILSKVEPLSGTWMAKPFDLPKRAGPWKNVIGRWIRLEPPFPEAPE HHHHHHHCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHCCEEECCCCCCCCHH EILAAAEKAIERQSALFPAHLKKLGSIADDDLSITAVVFQEELSYGPDNKGNGWFFLVSR HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCEEEEEEEE RVPGSRRRQVSLVRGYRLSSDMLSRLPVASALKSKKVVLVGCGAIGSFAAVELARSGVGQ CCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCE LTIIDFDLVEPGNTVRWALGRSVWGLPKTTALHDFLYHNYPWTNVGRGHAKVGSAISNVD EEEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH DVRKLEGNPMRWLRALIEDADIVVDTSASTECQGALAYMCRSIGKRYVLGHATEGAAGGV HHHHHCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCE VARFKPGAPGCYVCLQQHWSGKTLPLPTIDSSGTIVPTGCNAPTFTGGAFDLQEVSMEVV EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH RSTIGLLAPDVYDSGDWQLSILDLTENGRRILPRWKAETIAPHSSCSCGASQG HHHHHHHCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424